BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0149100 Os12g0149100|AK062909
         (53 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0149100  Hypothetical protein                                110   3e-25
Os11g0150450  Zinc finger, RING-type domain containing protein     95   1e-20

>Os12g0149100 Hypothetical protein
          Length = 53

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  DQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGEK 53
          DQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGEK
Sbjct: 1  DQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGEK 53



>Os11g0150450 Zinc finger, RING-type domain containing protein
          Length = 169

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/52 (86%), Positives = 47/52 (90%)

Query: 1   DQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGE 52
           DQCNCLFVGTGHSPRTSQVL NEPDQ NRTLY+P  EG N+LPSSEVNPPGE
Sbjct: 99  DQCNCLFVGTGHSPRTSQVLINEPDQSNRTLYSPSVEGDNNLPSSEVNPPGE 150



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,553,306
Number of extensions: 84871
Number of successful extensions: 177
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 17,035,801
Length adjustment: 26
Effective length of query: 27
Effective length of database: 15,678,237
Effective search space: 423312399
Effective search space used: 423312399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)