Os12g0149100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0149100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.84 | 0.458 | 7.86 | 0.132 | 0.917 | -0.276 | -0.715 | 5.68 | 0.416 | 21.9 | 22.8 | 932 | -- | -- |
| 107.69 | 0.483 | 8.01 | -1.17 | 0.903 | 0.353 | -0.0499 | -- | 0.126 | 21.5 | 30.51 | 4370 | -- | -- |
| 96.55 | 0.458 | 7.86 | 0.153 | 0.913 | -0.287 | -- | 5.56 | 0.421 | 21.9 | 22.96 | 973 | -- | -- |
| 107.31 | 0.482 | 8.01 | -1.18 | 0.891 | 0.336 | -- | -- | 0.12 | 21.8 | 29.9 | 4332 | -- | -- |
| 135.95 | 0.543 | 7.96 | -0.619 | -- | 0.618 | -- | 3.19 | 0.0947 | -- | 20.57 | 787 | -- | -- |
| 111.32 | 0.495 | 8.02 | -1.13 | 0.905 | -- | 0.126 | -- | 0.0696 | 22 | -- | -- | -- | -- |
| 111.38 | 0.494 | 8.02 | -1.14 | 0.905 | -- | -- | -- | 0.0694 | 22 | -- | -- | -- | -- |
| 143.07 | 0.557 | 8.01 | -1.3 | -- | 0.787 | -- | -- | -0.0192 | -- | 23.96 | 719 | -- | -- |
| 144.76 | 0.56 | 7.98 | -- | 0.899 | 0.131 | -- | -- | 0.224 | 21.8 | 30.3 | 4334 | -- | -- |
| 160.61 | 0.592 | 7.99 | -1.13 | -- | -- | -- | -- | 0.0699 | -- | -- | -- | -- | -- |
| 145.42 | 0.564 | 7.99 | -- | 0.901 | -- | -- | -- | 0.196 | 21.9 | -- | -- | -- | -- |
| 185.51 | 0.634 | 7.97 | -- | -- | 0.537 | -- | -- | 0.158 | -- | 24.5 | 667 | -- | -- |
| 194.03 | 0.65 | 7.97 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.73 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 3 | 93.83 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 54 | 94.99 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 62 | 95.08 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 66 | 95.10 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 70 | 95.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 72 | 95.23 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 78 | 95.27 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 88 | 95.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 90 | 95.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 104 | 95.51 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 117 | 95.60 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 190 | 96.06 | temperature | 20.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 199 | 96.13 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 210 | 96.20 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 220 | 96.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 262 | 96.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 266 | 96.56 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 274 | 96.58 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 10 |
| 284 | 96.62 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 288 | 96.63 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 294 | 96.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 296 | 96.66 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 299 | 96.67 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 303 | 96.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 308 | 96.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 314 | 96.71 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 327 | 96.74 | temperature | 25.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 332 | 96.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 334 | 96.77 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 352 | 96.80 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 425 | 96.95 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 507 | 97.05 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 517 | 97.09 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 520 | 97.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 531 | 97.09 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 535 | 97.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 538 | 97.11 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 550 | 97.14 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 560 | 97.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 561 | 97.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 623 | 97.25 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 635 | 97.26 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 636 | 97.26 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 658 | 97.27 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 664 | 97.28 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 667 | 97.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 673 | 97.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 693 | 97.32 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 764 | 97.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 765 | 97.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 773 | 97.36 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 17 |
| 803 | 97.39 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 814 | 97.40 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 846 | 97.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 939 | 97.50 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 996 | 97.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |