BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0126500 Os12g0126500|Os12g0126500
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0126500  Hypothetical protein                                475   e-134
Os11g0129800  Conserved hypothetical protein                      336   8e-93

>Os12g0126500 Hypothetical protein
          Length = 228

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MEEAGHGPSSSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQK 60
           MEEAGHGPSSSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQK
Sbjct: 1   MEEAGHGPSSSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQK 60

Query: 61  NRNTSFDKGGSSIAETHYPTDRHWHNEESDNQTQCSVSLTGSDVSGGHTYSHTMMTPVSR 120
           NRNTSFDKGGSSIAETHYPTDRHWHNEESDNQTQCSVSLTGSDVSGGHTYSHTMMTPVSR
Sbjct: 61  NRNTSFDKGGSSIAETHYPTDRHWHNEESDNQTQCSVSLTGSDVSGGHTYSHTMMTPVSR 120

Query: 121 TTNSSSDDLDGFDTPKGRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIRSNYC 180
           TTNSSSDDLDGFDTPKGRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIRSNYC
Sbjct: 121 TTNSSSDDLDGFDTPKGRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIRSNYC 180

Query: 181 DDDYVFQKMNADLIMDTVTFKNMKTSVGLIDSQSVIYELVYFLVYPAM 228
           DDDYVFQKMNADLIMDTVTFKNMKTSVGLIDSQSVIYELVYFLVYPAM
Sbjct: 181 DDDYVFQKMNADLIMDTVTFKNMKTSVGLIDSQSVIYELVYFLVYPAM 228



>Os11g0129800 Conserved hypothetical protein
          Length = 532

 Score =  336 bits (861), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 162/174 (93%), Positives = 166/174 (95%), Gaps = 2/174 (1%)

Query: 10  SSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQKNRNTSFDKG 69
           SSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQK+RNTSF+KG
Sbjct: 358 SSVERLKVSKHLAEEAMNYFEECVSISTLDSTDFSSLEDPQINSVVNIPQKSRNTSFNKG 417

Query: 70  GSSIAETHYPTDRHWHNEESDNQTQCSVSLTGSDVSGGHTYSHTMMTPVSRTTNSSSDDL 129
           GSSIAE HYPTDRHWHNEESDNQTQCSVSLTGSDVSGG T+SH MMTPVSRTTN+SSDDL
Sbjct: 418 GSSIAEIHYPTDRHWHNEESDNQTQCSVSLTGSDVSGGRTFSHNMMTPVSRTTNNSSDDL 477

Query: 130 DGFDTPKGRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIR--SNYCD 181
           DGFDTPK RSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIR    YCD
Sbjct: 478 DGFDTPKSRSSCFSFTHEPTKTVEGDDVQQYLRSFGRGISKDLREIRLTYGYCD 531



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,992,540
Number of extensions: 340726
Number of successful extensions: 577
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)