BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0125700 Os12g0125700|Os12g0125700
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0125700 292 1e-79
Os03g0834700 261 2e-70
Os03g0706200 185 2e-47
Os12g0195500 158 3e-39
Os12g0223900 158 3e-39
Os12g0267032 84 9e-17
Os12g0267016 75 4e-14
>Os12g0125700
Length = 214
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 154/214 (71%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXXXXXXXXXLEVCKKXXXXXXXX 60
MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQK LEVCKK
Sbjct: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKAAAGGGSDVAAALEVCKKAAEATAAG 60
Query: 61 XXXXXXXXXXXICKAADVMVKEVAARADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG 120
ICKAADVMVKEVAARADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG
Sbjct: 61 GASSDAAATSEICKAADVMVKEVAARADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG 120
Query: 121 LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKXXXXXXXXXXXXXXXXXIGGYAQD 180
LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAK IGGYAQD
Sbjct: 121 LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKDVSIDEDKSSDDDVDMVIGGYAQD 180
Query: 181 PYDDSGXXXXXXXXXXXXKSVKKFLECFHSKKFR 214
PYDDSG KSVKKFLECFHSKKFR
Sbjct: 181 PYDDSGLEELLQDQDALEKSVKKFLECFHSKKFR 214
>Os03g0834700
Length = 209
Score = 261 bits (668), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/186 (73%), Positives = 137/186 (73%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXXXXXXXXXLEVCKKXXXXXXXX 60
MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQK LEVCKK
Sbjct: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKAAAGGGSDVAAALEVCKKAAEATAAG 60
Query: 61 XXXXXXXXXXXICKAADVMVKEVAARADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG 120
ICKAADVMVKEVAA ADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG
Sbjct: 61 GASSDAAATSEICKAADVMVKEVAAHADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRG 120
Query: 121 LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKXXXXXXXXXXXXXXXXXIGGYAQD 180
LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAK IGGYAQD
Sbjct: 121 LTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKDVSIDEDKSSDDDVDMVIGGYAQD 180
Query: 181 PYDDSG 186
PYDDSG
Sbjct: 181 PYDDSG 186
>Os03g0706200
Length = 529
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 125/219 (57%), Gaps = 11/219 (5%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXXXXXXX---XXLEVCKKXXXXX 57
+A F AA E F VFIQET+AKAEEA +LAVL+QK LE+CKK
Sbjct: 72 VAAFVAATEHFMVFIQETRAKAEEACRLAVLMQKAAAAAAGGGSDVAVALEICKKAAAAT 131
Query: 58 XXXXXXXX-XXXXXXICKAADVMVKEVAARADLIQEGSAEEEAYRP--PVLIPVATARDF 114
+CK +VM KEVAA DLIQEG+AEEEAY+P P+LIP ARDF
Sbjct: 132 AAVGGGSSDAAATSEVCKVTNVMHKEVAAPTDLIQEGAAEEEAYQPQPPILIPALIARDF 191
Query: 115 GGSMRGLTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKXXXXXXXXXXXXX----- 169
GG+MRGLTQ TML +DSDHM +FEKKASV Q ++E RGKAK
Sbjct: 192 GGNMRGLTQSTMLANDSDHMTLFEKKASVGQIGIEEMRGKAKDVSSEEGSSEEMEASDDD 251
Query: 170 XXXXIGGYAQDPYDDSGXXXXXXXXXXXXKSVKKFLECF 208
IGG AQDPYDDSG K VK+FLECF
Sbjct: 252 VSMVIGGDAQDPYDDSGIEELVQDQGALEKLVKEFLECF 290
>Os12g0195500
Length = 359
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 121/248 (48%), Gaps = 44/248 (17%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXXXXXXXXXL------EVCKKXX 54
+A F AAE FRV IQET+AKAEEA +LAV+IQK EVCKK
Sbjct: 10 IAPFMEAAENFRVLIQETRAKAEEACRLAVVIQKAVAAATAVGGGSWDAAAAEEVCKKAA 69
Query: 55 XXXXXXXXXXX-------------------------------XXXXXXICKAADVMVKEV 83
+CKAADVM+KEV
Sbjct: 70 AAVGGGSWDAAAAAVVGGGSWDAAAAAEVCKKAAAVGGGCWDAAAASEVCKAADVMLKEV 129
Query: 84 AARADLIQEGSAEEEAYRPPVLIPVATARDFGGSMRGLTQRTMLGDDSDHMAMFEKKASV 143
AA ADLI+EG+ E+EA +P +LIP +T R FGG MR LTQRTML DDSDH A+FEKKASV
Sbjct: 130 AAPADLIKEGAVEDEADQPLILIPASTTRVFGGGMRRLTQRTMLVDDSDHTALFEKKASV 189
Query: 144 TQTDMKEKRGKAKXXXXXXXXXXXXXXX-----XXIGGYAQDPYDDSGXXXXXXXXXXXX 198
Q ++E RGKAK IGGY QDPYDDSG
Sbjct: 190 KQIGIEEMRGKAKDVSSEEGNSEEVKSSDDDEDMVIGGYTQDPYDDSGLEDLLQDQDALE 249
Query: 199 KSVKKFLE 206
KSV FLE
Sbjct: 250 KSV--FLE 255
>Os12g0223900
Length = 438
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 121/234 (51%), Gaps = 30/234 (12%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXX-----XXXXXXXLEVCKKXXX 55
+A F AAE FRV IQET+AKAEEA +LAV+IQK EVCKK
Sbjct: 10 IAPFMEAAENFRVLIQETRAKAEEACRLAVVIQKAVAAAALGGGSWDAAAAEEVCKKAAA 69
Query: 56 XXXXXXXXXXXXX------------------XXXICKAADVMVKEVAARADLIQEGSAEE 97
+CKAADVM+KEVAA A+LI+EG+ E+
Sbjct: 70 AVGGGSWDAAAAAEVCKKGAAVGGGCWDVAAASEVCKAADVMLKEVAAPANLIKEGTVED 129
Query: 98 EAYRPPVLIPVATARDFGGSMRGLTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKX 157
EA +P +LIP +T R FGG MR LTQRTML DDSDH A+FEKKASV Q ++E RGKAK
Sbjct: 130 EADQPLILIPASTTRVFGGGMRRLTQRTMLVDDSDHTALFEKKASVKQIGIEEMRGKAKD 189
Query: 158 XXXXXXXXXXXXXX-----XXIGGYAQDPYDDSGXXXXXXXXXXXXKSVKKFLE 206
I GYAQ+PYDDSG KSV FLE
Sbjct: 190 VSSEEGNSEEVKSSDYDEDMVIRGYAQNPYDDSGLEDLLQDQDALEKSV--FLE 241
>Os12g0267032
Length = 206
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Query: 1 MAEFEAAAEQFRVFIQETKAKAEEAYQLAVLIQKXXXXX---------------XXXXXX 45
+A F AAE FRV IQET+AKAEEA +LAV+IQK
Sbjct: 72 IAAFMEAAENFRVLIQETRAKAEEACRLAVVIQKAVAAATAAVAEVCKKAVGGGSWDAAA 131
Query: 46 XLEVCKKXXXXXXXXXXXXXXXXXXXICKAADVMVKEVAARADLIQEGSAEEEAYRPPVL 105
+EVCKK +CKAADVM+KEVAA ADLI+EG+ E+EA +P +L
Sbjct: 132 AVEVCKKGAAVGGGSWDAAAASE---VCKAADVMLKEVAAPADLIKEGAVEDEADQPLIL 188
Query: 106 IPVATARDFG 115
I +T R G
Sbjct: 189 ILASTTRILG 198
>Os12g0267016
Length = 169
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 42/69 (60%)
Query: 118 MRGLTQRTMLGDDSDHMAMFEKKASVTQTDMKEKRGKAKXXXXXXXXXXXXXXXXXIGGY 177
M +RTML DDSDH A+FEKKASV Q ++E RGKAK IGGY
Sbjct: 1 MNDYHRRTMLVDDSDHTALFEKKASVKQIGIEEMRGKAKDVSSEEVKSSDDDEDMVIGGY 60
Query: 178 AQDPYDDSG 186
AQDPYDDSG
Sbjct: 61 AQDPYDDSG 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,533,892
Number of extensions: 128311
Number of successful extensions: 289
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 7
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)