Os12g0125700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0125700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.09 | 0.634 | 2.92 | -0.119 | 0.0371 | 0.65 | -0.633 | 1.83 | -0.0183 | 13.8 | 19.9 | 918 | -- | -- |
| 187.42 | 0.643 | 2.87 | 0.0882 | 0.227 | 0.32 | -0.127 | -- | 0.0504 | 12 | 21.9 | 2090 | -- | -- |
| 183.52 | 0.631 | 2.91 | -0.0968 | 0.0418 | 0.626 | -- | 1.59 | -0.0105 | 13.2 | 19.8 | 919 | -- | -- |
| 186.32 | 0.64 | 2.86 | 0.112 | 0.23 | 0.332 | -- | -- | 0.0701 | 11.6 | 22.4 | 1764 | -- | -- |
| 183.61 | 0.631 | 2.92 | -0.0987 | -- | 0.64 | -- | 1.61 | -0.0113 | -- | 19.8 | 918 | -- | -- |
| 193.01 | 0.651 | 2.89 | -0.0024 | 0.119 | -- | -0.119 | -- | -0.0366 | 11.7 | -- | -- | -- | -- |
| 193.04 | 0.651 | 2.89 | -0.00786 | 0.122 | -- | -- | -- | -0.0376 | 11 | -- | -- | -- | -- |
| 189.31 | 0.644 | 2.87 | 0.081 | -- | 0.262 | -- | -- | 0.0451 | -- | 22.4 | 1764 | -- | -- |
| 186.64 | 0.64 | 2.87 | -- | 0.223 | 0.315 | -- | -- | 0.053 | 11.6 | 22.4 | 1764 | -- | -- |
| 193.97 | 0.651 | 2.89 | -0.0106 | -- | -- | -- | -- | -0.0386 | -- | -- | -- | -- | -- |
| 193.05 | 0.65 | 2.89 | -- | 0.122 | -- | -- | -- | -0.0368 | 11 | -- | -- | -- | -- |
| 188.98 | 0.642 | 2.87 | -- | -- | 0.262 | -- | -- | 0.0387 | -- | 22.5 | 1859 | -- | -- |
| 193.97 | 0.65 | 2.89 | -- | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.27 | wind | 9.0 | 90 | > th | dose independent | rect. | 13 | 2 |
| 3 | 171.27 | wind | 9.0 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 5 | 171.30 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 17 | 171.30 | wind | 9.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 35 | 172.95 | temperature | 20.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 44 | 174.76 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 45 | 175.00 | humidity | 80.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 46 | 175.09 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 49 | 175.75 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 58 | 176.19 | radiation | 30.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 66 | 177.26 | wind | 5.0 | 10 | > th | dose dependent | rect. | 23 | 11 |
| 72 | 177.36 | radiation | 40.0 | 10 | < th | dose independent | sin | 13 | NA |
| 77 | 177.58 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 79 | 177.69 | wind | 5.0 | 10 | > th | dose independent | rect. | 23 | 12 |
| 85 | 178.03 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 107 | 178.78 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 112 | 178.92 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 133 | 179.85 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 3 |
| 168 | 180.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 7 |
| 174 | 180.42 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 5 |
| 206 | 180.83 | humidity | 80.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 210 | 180.83 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 263 | 181.28 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 269 | 181.30 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 273 | 181.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 305 | 181.52 | temperature | 20.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 309 | 181.55 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 3 |
| 312 | 181.57 | temperature | 20.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 321 | 181.62 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 340 | 181.75 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 20 |
| 352 | 181.80 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 385 | 181.90 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 418 | 181.96 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 421 | 181.96 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 446 | 182.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 452 | 182.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 496 | 182.23 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 505 | 182.25 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 521 | 182.28 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 576 | 182.38 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 609 | 182.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 614 | 182.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 617 | 182.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 664 | 182.51 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 680 | 182.53 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 18 |
| 685 | 182.54 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 14 |
| 761 | 182.66 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 768 | 182.68 | humidity | 80.0 | 720 | < th | dose independent | rect. | 22 | 12 |
| 796 | 182.79 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 816 | 182.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 21 |
| 866 | 182.97 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 3 |
| 910 | 183.01 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 911 | 183.01 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 913 | 183.02 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 15 |
| 914 | 183.02 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 984 | 183.16 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 23 |