BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0707900 Os11g0707900|AK105585
         (452 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0707900  Protein of unknown function DUF740 family protein   638   0.0  

>Os11g0707900 Protein of unknown function DUF740 family protein
          Length = 452

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/452 (72%), Positives = 327/452 (72%)

Query: 1   KKKNRERERPSIDXXXXXXXXXXXXXXXXXXXXTNADLAACIFSQEFNCXXXXXXXXSTT 60
           KKKNRERERPSID                    TNADLAACIFSQEFNC        STT
Sbjct: 1   KKKNRERERPSIDLSLLPALLLLFSFALFASSATNADLAACIFSQEFNCKKKKKKKKSTT 60

Query: 61  SPVAVAEAYCGWIMETVSVCGLHPGVAVTGFCPACLRDRLAGLHPPSDLRRCKSFSYYAR 120
           SPVAVAEAYCGWIMETVSVCGLHPGVAVTGFCPACLRDRLAGLHPPSDLRRCKSFSYYAR
Sbjct: 61  SPVAVAEAYCGWIMETVSVCGLHPGVAVTGFCPACLRDRLAGLHPPSDLRRCKSFSYYAR 120

Query: 121 SSSYLEPHPQQXXXXXXXXXXXXTNTKLALGSLGKRWQEWRRKSXXXXXXXXXXXXXXXX 180
           SSSYLEPHPQQ            TNTKLALGSLGKRWQEWRRKS                
Sbjct: 121 SSSYLEPHPQQDALVLPDAADAPTNTKLALGSLGKRWQEWRRKSKLKHHHPPPATATDPA 180

Query: 181 XXXRRSCDAFSTRTMLDEPRASYHPTLFVPRSDDQIPVEEEERAYVPGGSAQTRDYYLXX 240
              RRSCDAFSTRTMLDEPRASYHPTLFVPRSDDQIPVEEEERAYVPGGSAQTRDYYL  
Sbjct: 181 LLARRSCDAFSTRTMLDEPRASYHPTLFVPRSDDQIPVEEEERAYVPGGSAQTRDYYLDS 240

Query: 241 XXXXXXXXXXXXXXXXXAGDQIPRMVXXXXXXRVSPATELYHQPHTFHYHQPSFEPPPLL 300
                            AGDQIPRMV      RVSPATELYHQPHTFHYHQPSFEPPPLL
Sbjct: 241 SSSSRRRRSVDRKSSSDAGDQIPRMVAAAANARVSPATELYHQPHTFHYHQPSFEPPPLL 300

Query: 301 ARERQEAKSKPKNKGIKGWSIWGLLHKKSSTTNSVGATASAFXXXXXXXXXXXXXXXYDG 360
           ARERQEAKSKPKNKGIKGWSIWGLLHKKSSTTNSVGATASAF               YDG
Sbjct: 301 ARERQEAKSKPKNKGIKGWSIWGLLHKKSSTTNSVGATASAFAGEARAAPPELRARGYDG 360

Query: 361 QMLRCXXXXXXXXXXXXXXXXXXXXXLGMRRADEVLLERNFSARYXXXXXCRYQFHKDDY 420
           QMLRC                     LGMRRADEVLLERNFSARY     CRYQFHKDDY
Sbjct: 361 QMLRCNSSVSARSSFSGIGSSFNGGRLGMRRADEVLLERNFSARYSSSSSCRYQFHKDDY 420

Query: 421 SNSIANNSGAGAGSRPPRSSTLPRTSLGLYYY 452
           SNSIANNSGAGAGSRPPRSSTLPRTSLGLYYY
Sbjct: 421 SNSIANNSGAGAGSRPPRSSTLPRTSLGLYYY 452



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,728,252
Number of extensions: 441578
Number of successful extensions: 1355
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 348
Effective length of database: 11,605,545
Effective search space: 4038729660
Effective search space used: 4038729660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)