BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0695900 Os11g0695900|AK101888
(1105 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0695900 Armadillo-like helical domain containing protein 1986 0.0
Os11g0693900 Conserved hypothetical protein 120 4e-27
>Os11g0695900 Armadillo-like helical domain containing protein
Length = 1105
Score = 1986 bits (5144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1105 (89%), Positives = 986/1105 (89%)
Query: 1 MEVEAQTSXXXXXXGDELRSLLSATLSPDKAAVDAATEGLSRIAASSDPRFPISLLAVAA 60
MEVEAQTS GDELRSLLSATLSPDKAAVDAATEGLSRIAASSDPRFPISLLAVAA
Sbjct: 1 MEVEAQTSAAAAAAGDELRSLLSATLSPDKAAVDAATEGLSRIAASSDPRFPISLLAVAA 60
Query: 61 ADGDQGTKVAAATYLKNYTRRNIDWGLSSPELYKEFRDRLAQALLQVEPFLLRVLIEVFR 120
ADGDQGTKVAAATYLKNYTRRNIDWGLSSPELYKEFRDRLAQALLQVEPFLLRVLIEVFR
Sbjct: 61 ADGDQGTKVAAATYLKNYTRRNIDWGLSSPELYKEFRDRLAQALLQVEPFLLRVLIEVFR 120
Query: 121 QVIEKDFVKENLWPELVPQLKQVIQSSNIISPGQHPEWNTINALTVLQSVVRPFQYFLNP 180
QVIEKDFVKENLWPELVPQLKQVIQSSNIISPGQHPEWNTINALTVLQSVVRPFQYFLNP
Sbjct: 121 QVIEKDFVKENLWPELVPQLKQVIQSSNIISPGQHPEWNTINALTVLQSVVRPFQYFLNP 180
Query: 181 KVAKEPVPPQLEQIASEILVPLQVTFHHIADKVLLSHDETNLEYEQLLLITSKCMYFTVR 240
KVAKEPVPPQLEQIASEILVPLQVTFHHIADKVLLSHDETNLEYEQLLLITSKCMYFTVR
Sbjct: 181 KVAKEPVPPQLEQIASEILVPLQVTFHHIADKVLLSHDETNLEYEQLLLITSKCMYFTVR 240
Query: 241 SYMPSRVKQILPSFCKDMFRILESLDFNSQYEDRATTRLKTAKRCLIILCTLVTRHRKHA 300
SYMPSRVKQILPSFCKDMFRILESLDFNSQYEDRATTRLKTAKRCLIILCTLVTRHRKHA
Sbjct: 241 SYMPSRVKQILPSFCKDMFRILESLDFNSQYEDRATTRLKTAKRCLIILCTLVTRHRKHA 300
Query: 301 DDQMAHIVNSATRISSQSIHLHKLGPLSDRIISLSFDVISRVLETGPGWRLVSPHFSSLL 360
DDQMAHIVNSATRISSQSIHLHKLGPLSDRIISLSFDVISRVLETGPGWRLVSPHFSSLL
Sbjct: 301 DDQMAHIVNSATRISSQSIHLHKLGPLSDRIISLSFDVISRVLETGPGWRLVSPHFSSLL 360
Query: 361 DSAIFPALALNEKDITEWEDDTDEYMRKNLPCELDDISGWAEDLFTARKSGINLLGVIAL 420
DSAIFPALALNEKDITEWEDDTDEYMRKNLPCELDDISGWAEDLFTARKSGINLLGVIAL
Sbjct: 361 DSAIFPALALNEKDITEWEDDTDEYMRKNLPCELDDISGWAEDLFTARKSGINLLGVIAL 420
Query: 421 SKGPPVVXXXXXXXXXXXXXXXXXXXXIGELLVIPFLSKFPIPPQGEDVSSKAVQNYFGV 480
SKGPPVV IGELLVIPFLSKFPIPPQGEDVSSKAVQNYFGV
Sbjct: 421 SKGPPVVSAASKRKKGDKSKGKGERSSIGELLVIPFLSKFPIPPQGEDVSSKAVQNYFGV 480
Query: 481 LMAFGGLQDFLTEKKDLTNTIIRNRILPLYSLDPCSPYLISAANWIIGQLALCLPEAMST 540
LMAFGGLQDFLTEKKDLTNTIIRNRILPLYSLDPCSPYLISAANWIIGQLALCLPEAMST
Sbjct: 481 LMAFGGLQDFLTEKKDLTNTIIRNRILPLYSLDPCSPYLISAANWIIGQLALCLPEAMST 540
Query: 541 NIYHSLMKALTMEDFDELSCYPVRASASGAIAELIENGYAPPDWLVLLQVVMKRISVEDE 600
NIYHSLMKALTMEDFDELSCYPVRASASGAIAELIENGYAPPDWLVLLQVVMKRISVEDE
Sbjct: 541 NIYHSLMKALTMEDFDELSCYPVRASASGAIAELIENGYAPPDWLVLLQVVMKRISVEDE 600
Query: 601 NESTLLFQLLGTIIESGQEKVLPHIPEIVSNIANTIMKLLPPVPDPWPQAVERGFAALVS 660
NESTLLFQLLGTIIESGQEKVLPHIPEIVSNIANTIMKLLPPVPDPWPQAVERGFAALVS
Sbjct: 601 NESTLLFQLLGTIIESGQEKVLPHIPEIVSNIANTIMKLLPPVPDPWPQAVERGFAALVS 660
Query: 661 MAQAWESSAPDENKDIEMRVWQSGQFAMAQTFSHVLQKAWLLPVEQMGXXXXXXXXXXXX 720
MAQAWESSAPDENKDIEMRVWQSGQFAMAQTFSHVLQKAWLLPVEQMG
Sbjct: 661 MAQAWESSAPDENKDIEMRVWQSGQFAMAQTFSHVLQKAWLLPVEQMGLSVCSSLPPLSC 720
Query: 721 XNDASILLEFIMRSITSMEETASMKVFELVAIWADIIACWDSWEEMEDQGIFNTIKEAVN 780
NDASILLEFIMRSITSMEETASMKVFELVAIWADIIACWDSWEEMEDQGIFNTIKEAVN
Sbjct: 721 VNDASILLEFIMRSITSMEETASMKVFELVAIWADIIACWDSWEEMEDQGIFNTIKEAVN 780
Query: 781 FHQNFDSNGFFLKILPXXXXXXXXXXXXXXXXXFITRAIEAYPSATWRACSCMHTLLHTP 840
FHQNFDSNGFFLKILP FITRAIEAYPSATWRACSCMHTLLHTP
Sbjct: 781 FHQNFDSNGFFLKILPSRSENSSQSSVISWVSSFITRAIEAYPSATWRACSCMHTLLHTP 840
Query: 841 NFSHGAEDTRMTLAVSFAQAAFSRFKSVSDSPSGIWKPLILVISSCYICYPDAIEQVLRK 900
NFSHGAEDTRMTLAVSFAQAAFSRFKSVSDSPSGIWKPLILVISSCYICYPDAIEQVLRK
Sbjct: 841 NFSHGAEDTRMTLAVSFAQAAFSRFKSVSDSPSGIWKPLILVISSCYICYPDAIEQVLRK 900
Query: 901 YDSNGYAIWASALAQISSSSFNPGLSSESEIKLAVLTLATVIEHLLALSMGGTKLLHDCC 960
YDSNGYAIWASALAQISSSSFNPGLSSESEIKLAVLTLATVIEHLLALSMGGTKLLHDCC
Sbjct: 901 YDSNGYAIWASALAQISSSSFNPGLSSESEIKLAVLTLATVIEHLLALSMGGTKLLHDCC 960
Query: 961 VSLMESCIHLKEVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1020
VSLMESCIHLKEVQ
Sbjct: 961 VSLMESCIHLKEVQEDGDDGDGAEDLDDDDDDEEEEDTDEDDEDYNQDSDDDDVREETEE 1020
Query: 1021 XFLQRYAAAAXXXXXXXXXXXXXXXXTQDIELGSLDEMDVQQVVLSMMKIRPDLIRAQTF 1080
FLQRYAAAA TQDIELGSLDEMDVQQVVLSMMKIRPDLIRAQTF
Sbjct: 1021 EFLQRYAAAAGGESIEIVEDGDIDDETQDIELGSLDEMDVQQVVLSMMKIRPDLIRAQTF 1080
Query: 1081 PDGLMERMAETFPEYEQLFHVHRQA 1105
PDGLMERMAETFPEYEQLFHVHRQA
Sbjct: 1081 PDGLMERMAETFPEYEQLFHVHRQA 1105
>Os11g0693900 Conserved hypothetical protein
Length = 150
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 913 LAQISSSSFNPGLSSESEIKLAVLTLATVIEHLLALSMGGTKLLHDCCVSLMESCIHLKE 972
LAQISSSSFNPGLSSESEIKLAVLTLATVIE LLALS GGTKLLHDCCVSLMESCIHLKE
Sbjct: 1 LAQISSSSFNPGLSSESEIKLAVLTLATVIERLLALSTGGTKLLHDCCVSLMESCIHLKE 60
Query: 973 VQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLQRYAAAAXX 1032
VQ FLQRYAAAA
Sbjct: 61 VQ-----EDGDDGDGAEDLDDDDEEEEDTDEDDEDSDDDDDVREETEEEFLQRYAAAAAG 115
Query: 1033 XXXXXXXXXXXXXXTQDIELG 1053
TQDIELG
Sbjct: 116 ESIEIVEDGDIDDETQDIELG 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,375,554
Number of extensions: 1153931
Number of successful extensions: 3001
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2996
Number of HSP's successfully gapped: 3
Length of query: 1105
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 994
Effective length of database: 11,240,047
Effective search space: 11172606718
Effective search space used: 11172606718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 161 (66.6 bits)