BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0688200 Os11g0688200|AK119394
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0688200 Conserved hypothetical protein 152 4e-38
Os12g0296700 94 2e-20
Os09g0100500 92 1e-19
Os04g0101000 90 4e-19
>Os11g0688200 Conserved hypothetical protein
Length = 85
Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/85 (87%), Positives = 74/85 (87%)
Query: 1 EYDMTIKINPPQGEDHIYYFXXXXXXXXXXXALYDAFWEEFLCLNHIYQDRLQHSHYSFH 60
EYDMTIKINPPQGEDHIYYF ALYDAFWEEFLCLNHIYQDRLQHSHYSFH
Sbjct: 1 EYDMTIKINPPQGEDHIYYFRRRHRRDTRRTALYDAFWEEFLCLNHIYQDRLQHSHYSFH 60
Query: 61 PMREPGEDNLQSTILLFTSSVRFYI 85
PMREPGEDNLQSTILLFTSSVRFYI
Sbjct: 61 PMREPGEDNLQSTILLFTSSVRFYI 85
>Os12g0296700
Length = 375
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EYDMTIKINPPQGEDHIYYFXXXXXXXXXXXALYDAFWEEFLCLNHIYQDRLQHSHYSFH 60
EYDMTIKINPP+GE +YYF ALYDA E FL LNHIYQD+LQHS Y +H
Sbjct: 50 EYDMTIKINPPRGETDMYYFRTRHRRDTIRAALYDASREAFLRLNHIYQDKLQHSRYCYH 109
Query: 61 PMREPGED 68
PMREPGED
Sbjct: 110 PMREPGED 117
>Os09g0100500
Length = 293
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 47/66 (71%)
Query: 1 EYDMTIKINPPQGEDHIYYFXXXXXXXXXXXALYDAFWEEFLCLNHIYQDRLQHSHYSFH 60
EYDMT+KINPP+GE +YYF ALYD E FL LNHIYQDRLQHS YS+H
Sbjct: 52 EYDMTVKINPPRGERDMYYFRTRHRRDTVRAALYDVSREAFLRLNHIYQDRLQHSRYSYH 111
Query: 61 PMREPG 66
PMREPG
Sbjct: 112 PMREPG 117
>Os04g0101000
Length = 218
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 48/68 (70%)
Query: 1 EYDMTIKINPPQGEDHIYYFXXXXXXXXXXXALYDAFWEEFLCLNHIYQDRLQHSHYSFH 60
EY MT+KINPP+GE +YYF ALYD E FL LNHIY+DRLQHS YS+H
Sbjct: 52 EYYMTVKINPPRGERDMYYFQTHHRWDTMRAALYDVSREAFLRLNHIYRDRLQHSRYSYH 111
Query: 61 PMREPGED 68
PMREPGED
Sbjct: 112 PMREPGED 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,666,394
Number of extensions: 74309
Number of successful extensions: 175
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 4
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)