BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0686100 Os11g0686100|AK110864
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0686100  Conserved hypothetical protein                      132   6e-32

>Os11g0686100 Conserved hypothetical protein
          Length = 109

 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 73/109 (66%)

Query: 1   MAVGHPSRRHSTLFRGRLAPLCYKMEPAPCFLSLFASSRVXXXXXXXXXXXXXXXRAVGH 60
           MAVGHPSRRHSTLFRGRLAPLCYKMEPAPCFLSLFASSRV               RAVGH
Sbjct: 1   MAVGHPSRRHSTLFRGRLAPLCYKMEPAPCFLSLFASSRVSPWPHHLSLSPPSLSRAVGH 60

Query: 61  LQPPLLSXXXXXXXXXXXXXXXXXXXXXGIASVSRGDHRRHVPAGNQWR 109
           LQPPLLS                     GIASVSRGDHRRHVPAGNQWR
Sbjct: 61  LQPPLLSRLCAGRPRRRHPRPCRCIPSPGIASVSRGDHRRHVPAGNQWR 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,851,491
Number of extensions: 62531
Number of successful extensions: 98
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)