BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0672900 Os11g0672900|AK105350
         (340 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0672900  Protein of unknown function DUF1645 family pro...   229   2e-60

>Os11g0672900 Protein of unknown function DUF1645 family protein
          Length = 340

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/327 (44%), Positives = 144/327 (44%)

Query: 14  IPGDPLADSACSTPFVSAPSSPTREREREHHFASPHGAPCFFSAPASPTRXXXXXXXXXX 73
           IPGDPLADSACSTPFVSAPSSPTREREREHHFASPHGAPCFFSAPASPTR          
Sbjct: 14  IPGDPLADSACSTPFVSAPSSPTREREREHHFASPHGAPCFFSAPASPTRGGGGGGCLGD 73

Query: 74  XXXXXXXXXXXXXXXXXXXXXELFHNGQIRAVRXXXXXXXXXXXXXXVDGDGHASHLXXX 133
                                ELFHNGQIRAVR              VDGDGHASHL   
Sbjct: 74  FDFDFSSRFPSPSAAAMSSADELFHNGQIRAVRLSAMLLQPQPLAPLVDGDGHASHLAEE 133

Query: 134 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFRTRWRXXXXXXXXXXXXXXXXXXXXXX 193
                                          PFRTRWR                      
Sbjct: 134 DAAAVEEDGAEADERGRIRSRSVRRKARSMSPFRTRWRAPSPAPETAEEVEAVATPAASR 193

Query: 194 XXXXXXXXXXXXXXXXXXXXXWAFLKDLLHRSKSDGGKNHHHDTXXXXXXXXXXXXXXXX 253
                                WAFLKDLLHRSKSDGGKNHHHDT                
Sbjct: 194 SSSSSSTASSASSTSSRGSRRWAFLKDLLHRSKSDGGKNHHHDTAPPPPPPKRSPSPSPS 253

Query: 254 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYLPYRQGLLLFGCI 313
                                                        TYLPYRQGLLLFGCI
Sbjct: 254 PSPAPAAASARGGRGAATGRRSRRRSAHERLYEARRAEAEEMRRRTYLPYRQGLLLFGCI 313

Query: 314 GLGSRGYGAVHGLARGLNAAAAVSSRS 340
           GLGSRGYGAVHGLARGLNAAAAVSSRS
Sbjct: 314 GLGSRGYGAVHGLARGLNAAAAVSSRS 340



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,151,770
Number of extensions: 161906
Number of successful extensions: 607
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)