BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0672600 Os11g0672600|AK119365
(161 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0672600 Conserved hypothetical protein 318 9e-88
Os09g0545100 187 2e-48
Os08g0201600 177 2e-45
Os09g0536100 151 3e-37
Os04g0563500 RNA-directed DNA polymerase (Reverse transcrip... 129 6e-31
Os11g0577200 119 8e-28
Os01g0153650 111 2e-25
Os06g0482900 95 2e-20
Os04g0206900 91 4e-19
Os11g0189000 90 8e-19
Os09g0322700 79 1e-15
Os01g0173700 70 5e-13
Os08g0410200 69 2e-12
Os09g0510800 63 8e-11
>Os11g0672600 Conserved hypothetical protein
Length = 161
Score = 318 bits (816), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL
Sbjct: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPTKINSKQR 120
RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPTKINSKQR
Sbjct: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPTKINSKQR 120
Query: 121 MTTSSTLWVRQIQEQWRSPYPRSGWPRIIFQTWKVISWKMR 161
MTTSSTLWVRQIQEQWRSPYPRSGWPRIIFQTWKVISWKMR
Sbjct: 121 MTTSSTLWVRQIQEQWRSPYPRSGWPRIIFQTWKVISWKMR 161
>Os09g0545100
Length = 1276
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/113 (82%), Positives = 105/113 (92%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
GSNALSSLHFKL ATA+ALRSWGA RIS+LR QLAIAHE++ QLD+A DDR LS GER+L
Sbjct: 591 GSNALSSLHFKLHATAAALRSWGAKRISELRQQLAIAHEVVFQLDKAQDDRLLSAGERSL 650
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPT 113
RA+LKGRCLAL SLERIRL+QR+RLL+LKHSGT+AQFFRLKINARRRKKAIP+
Sbjct: 651 RASLKGRCLALTSLERIRLRQRARLLFLKHSGTTAQFFRLKINARRRKKAIPS 703
>Os08g0201600
Length = 803
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 105/122 (86%)
Query: 2 SNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERALR 61
SNALSSLHFKL+A A+ALRSWGA RIS+L QLAIAHE++ QLD+A DDR LS GER+L+
Sbjct: 106 SNALSSLHFKLRAIAAALRSWGAKRISELCQQLAIAHEVVFQLDKAQDDRLLSTGERSLQ 165
Query: 62 AALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPTKINSKQRM 121
A+LKGRCLALASLERIRL+Q +RLL+LKHSGT+AQFFRLKINARRRKKAIP+
Sbjct: 166 ASLKGRCLALASLERIRLRQCARLLFLKHSGTTAQFFRLKINARRRKKAIPSICQDGVIA 225
Query: 122 TT 123
TT
Sbjct: 226 TT 227
>Os09g0536100
Length = 1444
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 91/104 (87%)
Query: 10 FKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERALRAALKGRCL 69
+L+ATA AL+SWG RIS+LRLQLA+AHEIIL+LD A+D R LS ER+LRAALKGRCL
Sbjct: 964 VELRATAMALKSWGERRISELRLQLAMAHEIILRLDGAMDLRLLSHEERSLRAALKGRCL 1023
Query: 70 ALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPT 113
ALA+LERIRL+QR+RL YLKHSGT++QFF LKINARRRKK IP
Sbjct: 1024 ALAALERIRLRQRARLRYLKHSGTASQFFYLKINARRRKKTIPV 1067
>Os04g0563500 RNA-directed DNA polymerase (Reverse transcriptase) domain containing
protein
Length = 1453
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 72/80 (90%)
Query: 33 QLAIAHEIILQLDRALDDRTLSVGERALRAALKGRCLALASLERIRLKQRSRLLYLKHSG 92
+LA+AHE+ILQLDRA+D R LS ER+LRA LKGRCLALASLERIRL+QR+RL YLKHSG
Sbjct: 955 KLAVAHEVILQLDRAMDSRQLSPEERSLRAILKGRCLALASLERIRLRQRARLRYLKHSG 1014
Query: 93 TSAQFFRLKINARRRKKAIP 112
T++QFF LKINARRRKK IP
Sbjct: 1015 TASQFFHLKINARRRKKTIP 1034
>Os11g0577200
Length = 1031
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 68/82 (82%)
Query: 44 LDRALDDRTLSVGERALRAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKIN 103
LD+A DDR LS ER+LRA LKGRCLALASLERIRL+QR+RLL+LKHSGT+AQFFRLKIN
Sbjct: 45 LDKAQDDRLLSAEERSLRATLKGRCLALASLERIRLRQRARLLFLKHSGTTAQFFRLKIN 104
Query: 104 ARRRKKAIPTKINSKQRMTTSS 125
ARRRKKAIPT + TT
Sbjct: 105 ARRRKKAIPTLCHDGVYATTEE 126
>Os01g0153650
Length = 499
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 2 SNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERALR 61
+N LH KL+ A LR W + RI D+RLQLAIA+E++ QLD A +DR LS E+ LR
Sbjct: 55 TNPFVRLHLKLKRLARDLRRWKSTRIGDIRLQLAIANEVVFQLDVAQEDRVLSEEEQCLR 114
Query: 62 AALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAI 111
LK R L LA+LERIRL+QR+R+ +LKH +++FF++K N R+RK I
Sbjct: 115 KLLKSRVLGLAALERIRLRQRARITWLKHGDVNSKFFQIKANGRKRKNHI 164
>Os06g0482900
Length = 380
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 71/113 (62%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
+N + LH KL+ A L+ W + D++LQLA+A+E++ QLD A + R L+ ER
Sbjct: 257 ATNPFAILHIKLKRLARDLKRWSQQNVGDIKLQLAVANEVVFQLDVAQETRNLTADERIF 316
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAIPT 113
R LK + L LA L +I+++Q+SRL +LK +++FF +K N+ RRK I T
Sbjct: 317 RDDLKAKILGLAVLNKIQIRQQSRLTWLKEGDVNSKFFHIKANSHRRKNYIQT 369
>Os04g0206900
Length = 987
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 72/111 (64%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
+N L+ KL+ A L+ W ++ D++LQLA+A E++ QLD A + RTLS ER L
Sbjct: 823 ATNCLAIFRIKLRRLARDLKGWSRSQVGDIKLQLAVASEVVFQLDVAQETRTLSDDERLL 882
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAI 111
+ LK R LAL+ L +I+++QRSR ++K +++FF +K N+RRRK I
Sbjct: 883 VSNLKNRILALSVLNKIQIRQRSRQTWIKEGDVNSKFFHIKANSRRRKNFI 933
>Os11g0189000
Length = 1111
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
+N L+ KL+ A L+ W ++ D++LQLA+A +++ QLD A + RTLS ER L
Sbjct: 364 ATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQLAVASKVVFQLDIAQETRTLSDDERLL 423
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAI 111
+ LK R LAL+ L +I+++QRSR +LK ++ FF +K N+RRRK I
Sbjct: 424 VSNLKNRILALSVLNKIQIRQRSRQTWLKEGDVNSNFFHIKANSRRRKNYI 474
>Os09g0322700
Length = 1069
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%)
Query: 1 GSNALSSLHFKLQATASALRSWGAWRISDLRLQLAIAHEIILQLDRALDDRTLSVGERAL 60
++A+ SLH KL T+ ALR W + L+L++ IA E+I +LD A ++R+LS E
Sbjct: 382 AADAIRSLHTKLARTSKALREWNRKSVRGLKLRIDIACELIFRLDLAHEERSLSQEEICF 441
Query: 61 RAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFFRLKINARRRKKAI 111
R LK + L L +L+R+R++QRS+ +++ + QFF++K +AR+RK I
Sbjct: 442 RRFLKQKLLRLTALDRVRIRQRSKQTWIRAGDANTQFFQIKASARKRKNFI 492
>Os01g0173700
Length = 625
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 32 LQLAIAHEIILQLDRALDDRTLSVGERALRAALKGRCLALASLERIRLKQRSRLLYLKHS 91
+Q +A E+IL+LD A +DR L+V E LR LK R L LA++ + + +QRSRL +LK
Sbjct: 1 MQFHVAQEVILRLDLAQEDRILTVDEHQLRKDLKLRILGLAAVAKSKKRQRSRLTWLKEG 60
Query: 92 GTSAQFFRLKINARRRKKAIPTKINSKQRMTTSSTL 127
+ +FF + N+RRRK I Q TTS+ L
Sbjct: 61 DANTKFFHIHANSRRRKNHI------HQLHTTSAIL 90
>Os08g0410200
Length = 777
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 34 LAIAHEIILQLDRALDDRTLSVGERALRAALKGRCLALASLERIRLKQRSRLLYLKHSGT 93
+ IA E+IL+LD A ++R LS E R +LK + L LA+L+R+RL+QRSR +++K S
Sbjct: 1 MEIASELILRLDLAQEERNLSAQEILFRRSLKQKLLGLAALDRVRLRQRSRQVWIKASDA 60
Query: 94 SAQFFRLKINARRRKKAI 111
+ +FF++K +ARRRK I
Sbjct: 61 NTRFFQIKASARRRKNFI 78
>Os09g0510800
Length = 1584
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 39 EIILQLDRALDDRTLSVGERALRAALKGRCLALASLERIRLKQRSRLLYLKHSGTSAQFF 98
E+IL+LD A +DR L+ E LR LK R L LA++ + + +QRSRL +LK + +FF
Sbjct: 932 EVILRLDLAQEDRILTADEHQLRKDLKLRILGLAAVAKSKKRQRSRLTWLKEGDANTKFF 991
Query: 99 RLKINARRRKKAIPTKINSKQRMTTSSTL 127
+ N+RRRK I Q TTS+ L
Sbjct: 992 HIHANSRRRKNHI------HQLHTTSAIL 1014
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,955,700
Number of extensions: 163058
Number of successful extensions: 654
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 14
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)