BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0641300 Os11g0641300|Os11g0641300
         (236 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0641300  Conserved hypothetical protein                      274   3e-74

>Os11g0641300 Conserved hypothetical protein
          Length = 236

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/236 (64%), Positives = 152/236 (64%)

Query: 1   MEKGTVGGIGMCDRLLTFLAKNLSMNRQKTITDGPRNDSSXXXXXXXXXXXXXXXXXFTI 60
           MEKGTVGGIGMCDRLLTFLAKNLSMNRQKTITDGPRNDSS                 FTI
Sbjct: 1   MEKGTVGGIGMCDRLLTFLAKNLSMNRQKTITDGPRNDSSNNNGGHEEERGEEDDDEFTI 60

Query: 61  EIEKAXXXXXXXXXXXXXXXSITATILEEKSTEVATSNGGASVQKEDEEGGRRNDPXXXX 120
           EIEKA               SITATILEEKSTEVATSNGGASVQKEDEEGGRRNDP    
Sbjct: 61  EIEKAEVLLVDEKDDDDDHKSITATILEEKSTEVATSNGGASVQKEDEEGGRRNDPPVAA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKRLLSKKRQASSSQLGGDHD 180
                                                  VKRLLSKKRQASSSQLGGDHD
Sbjct: 121 EAATVAEAAPVKEEKKVKKTVAIKEESGAAAAAGSASSAVKRLLSKKRQASSSQLGGDHD 180

Query: 181 GGQQTKPPARRPGLRPRMPSILRVPSNINEKSSSFIEERKKSFXXXXXXXXXKPEK 236
           GGQQTKPPARRPGLRPRMPSILRVPSNINEKSSSFIEERKKSF         KPEK
Sbjct: 181 GGQQTKPPARRPGLRPRMPSILRVPSNINEKSSSFIEERKKSFGGGGAGAGGKPEK 236



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,411,403
Number of extensions: 168521
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 154 (63.9 bits)