BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0638200 Os11g0638200|AY224587
         (544 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0638200  Conserved hypothetical protein                      936   0.0  
Os11g0638400                                                       69   1e-11

>Os11g0638200 Conserved hypothetical protein
          Length = 544

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/499 (92%), Positives = 462/499 (92%)

Query: 1   SASVMACXXXXXXXXXXXXXXXXXXXXXXXXXPIGAQWGRPIPRGGFPATPTPSSSDELS 60
           SASVMAC                         PIGAQWGRPIPRGGFPATPTPSSSDELS
Sbjct: 1   SASVMACRVAGGGGGGGGGVSSAASSRWRGRRPIGAQWGRPIPRGGFPATPTPSSSDELS 60

Query: 61  LATGARTDSPNGMGGSFGWLEFLLSTSHPCEDDAAEELPVEPPVAAMDAAHDGRDEVRGE 120
           LATGARTDSPNGMGGSFGWLEFLLSTSHPCEDDAAEELPVEPPVAAMDAAHDGRDEVRGE
Sbjct: 61  LATGARTDSPNGMGGSFGWLEFLLSTSHPCEDDAAEELPVEPPVAAMDAAHDGRDEVRGE 120

Query: 121 VPSEPSEVLAGEEEAAMDAAHDGRGEVRGEVTFERAIGASSRAGYEGIKLGEEPSLKPAM 180
           VPSEPSEVLAGEEEAAMDAAHDGRGEVRGEVTFERAIGASSRAGYEGIKLGEEPSLKPAM
Sbjct: 121 VPSEPSEVLAGEEEAAMDAAHDGRGEVRGEVTFERAIGASSRAGYEGIKLGEEPSLKPAM 180

Query: 181 VGAPEIKMIEIAEASSVAQWDLLAGTEDCSPEINPKIVDLQQQQQEASLLPDEVISEADA 240
           VGAPEIKMIEIAEASSVAQWDLLAGTEDCSPEINPKIVDLQQQQQEASLLPDEVISEADA
Sbjct: 181 VGAPEIKMIEIAEASSVAQWDLLAGTEDCSPEINPKIVDLQQQQQEASLLPDEVISEADA 240

Query: 241 SILAQYSSVTKKDDDAEFLICRPNFGFVTRPQQHTPKKRHPKNKRAMGINLLDREGNICS 300
           SILAQYSSVTKKDDDAEFLICRPNFGFVTRPQQHTPKKRHPKNKRAMGINLLDREGNICS
Sbjct: 241 SILAQYSSVTKKDDDAEFLICRPNFGFVTRPQQHTPKKRHPKNKRAMGINLLDREGNICS 300

Query: 301 DDKLPSQGCLVGEXXXXXXXXXXXXFDLKELMELCGQADKIQSEVFLKKAMKKACRDSDD 360
           DDKLPSQGCLVGE            FDLKELMELCGQADKIQSEVFLKKAMKKACRDSDD
Sbjct: 301 DDKLPSQGCLVGEYNNLLLQLYQLLFDLKELMELCGQADKIQSEVFLKKAMKKACRDSDD 360

Query: 361 AVADIVFQALKVDGFILRLLRYLKSQFNFCRTQAWKIRNEILRIGGSDEMQQGVKVDTTR 420
           AVADIVFQALKVDGFILRLLRYLKSQFNFCRTQAWKIRNEILRIGGSDEMQQGVKVDTTR
Sbjct: 361 AVADIVFQALKVDGFILRLLRYLKSQFNFCRTQAWKIRNEILRIGGSDEMQQGVKVDTTR 420

Query: 421 VIENTASTVDSETPVEQKRRKKVETEYVLGGKDLEFILSYEDDELETFDEDMLKDQAMVR 480
           VIENTASTVDSETPVEQKRRKKVETEYVLGGKDLEFILSYEDDELETFDEDMLKDQAMVR
Sbjct: 421 VIENTASTVDSETPVEQKRRKKVETEYVLGGKDLEFILSYEDDELETFDEDMLKDQAMVR 480

Query: 481 QQIENFGYGFLHSWREVIC 499
           QQIENFGYGFLHSWREVIC
Sbjct: 481 QQIENFGYGFLHSWREVIC 499



>Os11g0638400 
          Length = 195

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 435 VEQKRRKKVE--TEYVLGGKDLEFILSYEDDELETFDEDMLKDQAMVRQQIENFGYGFLH 492
           +E+ +RKKV+   E V+ G DL+ +LSYE+DE    +E ML+DQ   R QIEN GY F+H
Sbjct: 99  LERNKRKKVKKMVERVIDGGDLDLVLSYENDEECLLNESMLEDQETFRHQIENLGYAFIH 158

Query: 493 SWREVI 498
             REVI
Sbjct: 159 VMREVI 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,305,085
Number of extensions: 778460
Number of successful extensions: 2101
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 2
Length of query: 544
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 438
Effective length of database: 11,501,117
Effective search space: 5037489246
Effective search space used: 5037489246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)