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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0638200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.52 (0.0684) R2 : 0.0851
β1 : 2.1 (0.351) R2dD : 0.377 R2D : -0.527
β2 : -- (--) R2dC : -- R2C : --
β3 : -36.2 (5.69) R2dE : 13.6 R2E : -14.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 219 (34) R2dD*E : 14.2 R2D*E : -13.6
γ1 : 0.0327 (0.091) R2dN8 : 0.000354 R2N8 : -0.17
σ : 0.796
deviance : 292.44
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 30
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 7.17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.98 0.799 2.53 2.11 0.204 -36.1 0.645 218 0.0336 20.2 1000 30 15.2 7.03
315.32 0.833 2.87 0.108 0.233 -0.198 0.763 -- 0.0266 19.5 1010 2 16 2.38
290.22 0.793 2.53 2.1 0.202 -36.1 -- 218 0.0354 20.4 1000 30 15 7.05
316.12 0.828 2.88 0.111 0.27 -0.295 -- -- 0.0248 19.9 1016 2 17 2.98
292.44 0.796 2.52 2.1 -- -36.2 -- 219 0.0327 -- 1000 30 15 7.17
315.48 0.833 2.87 0.106 0.212 -- 0.744 -- 0.0291 19.6 -- -- -- --
317.01 0.834 2.87 0.0878 0.212 -- -- -- 0.0299 19.9 -- -- -- --
319.13 0.836 2.87 0.0784 -- 0.316 -- -- 0.0298 -- 1000 30 15 7.17
315.72 0.828 2.88 -- 0.307 -0.29 -- -- 0.0218 19.4 1044 2 17 2.66
319.44 0.835 2.87 0.0854 -- -- -- -- 0.027 -- -- -- -- --
317.21 0.833 2.87 -- 0.211 -- -- -- 0.0201 19.9 -- -- -- --
316.9 0.829 2.87 -- -- 0.229 -- -- 0.0188 -- 1049 21 15.6 5.43
319.64 0.834 2.87 -- -- -- -- -- 0.0175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.99 atmosphere 1000.0 30 < th dose dependent rect. 15 7
13 289.41 atmosphere 1000.0 30 < th dose dependent rect. 15 3
21 289.72 atmosphere 1000.0 30 < th dose dependent rect. 15 1
35 290.00 atmosphere 1000.0 10 < th dose independent rect. 15 3
45 290.06 atmosphere 1000.0 10 < th dose independent rect. 15 1
102 295.59 wind 1.0 30 < th dose independent rect. 17 1
113 295.59 wind 1.0 30 < th dose dependent rect. 17 1
128 296.58 humidity 70.0 90 < th dose independent rect. 17 1
160 297.72 humidity 70.0 90 < th dose dependent rect. 17 2
256 300.25 humidity 80.0 10 > th dose dependent rect. 20 1
261 300.46 atmosphere 1015.0 30 < th dose independent rect. 21 23
289 300.83 humidity 80.0 10 > th dose independent rect. 20 1
290 300.85 radiation 10.0 43200 < th dose dependent rect. 21 1
296 300.95 wind 5.0 30 < th dose dependent rect. 20 1
303 300.98 wind 5.0 10 < th dose independent rect. 20 1
304 300.99 temperature 20.0 10 > th dose independent rect. 20 1
325 301.06 atmosphere 1000.0 30 > th dose independent rect. 20 1
327 301.07 temperature 10.0 1440 > th dose independent rect. 21 1
330 301.07 temperature 30.0 1440 < th dose independent rect. 21 1
334 301.07 humidity 50.0 1440 > th dose independent rect. 21 1
340 301.07 atmosphere 995.0 1440 > th dose independent rect. 21 1
341 301.07 radiation 1.0 1440 < th dose independent rect. 21 1
361 301.07 temperature 10.0 1440 > th dose independent rect. 22 23
377 301.08 temperature 30.0 30 < th dose dependent rect. 20 1
381 301.10 wind 1.0 30 > th dose independent rect. 20 1
383 301.10 temperature 10.0 30 > th dose independent rect. 20 1
385 301.10 temperature 30.0 30 < th dose independent rect. 20 1
386 301.10 humidity 50.0 30 > th dose independent rect. 20 1
390 301.10 atmosphere 1010.0 30 < th dose independent rect. 20 1
392 301.10 radiation 1.0 30 < th dose independent rect. 20 1
397 301.10 precipitation 0.1 30 < th dose independent rect. 20 1
398 301.10 temperature 10.0 30 > th dose independent rect. 21 23
399 301.10 atmosphere 995.0 30 > th dose dependent rect. 20 1
400 301.10 radiation 1.0 30 < th dose dependent rect. 20 1
405 301.10 precipitation 0.1 30 < th dose dependent rect. 20 1
406 301.11 temperature 10.0 30 > th dose dependent rect. 20 1
408 301.11 atmosphere 1015.0 30 < th dose dependent rect. 20 1
410 301.12 humidity 90.0 30 < th dose independent rect. 20 1
450 301.26 wind 1.0 30 > th dose dependent rect. 20 1
464 301.39 humidity 90.0 30 < th dose dependent rect. 20 1
465 301.42 precipitation 0.1 10 < th dose independent rect. 21 23
467 301.42 precipitation 0.1 10 < th dose dependent rect. 21 23
480 301.75 wind 1.0 90 < th dose independent rect. 14 1
482 301.75 atmosphere 995.0 10 > th dose independent rect. 21 23
495 302.02 atmosphere 1000.0 90 < th dose dependent sin 18 NA
556 302.59 wind 9.0 30 < th dose independent rect. 21 23
623 303.25 humidity 50.0 30 > th dose independent rect. 21 23
627 303.36 wind 1.0 90 > th dose independent rect. 21 22
729 304.48 wind 1.0 10 > th dose independent rect. 21 23
739 304.59 wind 1.0 90 < th dose independent rect. 2 1
811 305.15 wind 1.0 90 < th dose dependent rect. 2 1
842 305.39 temperature 30.0 30 < th dose independent rect. 21 23
849 305.49 atmosphere 1010.0 720 < th dose independent rect. 12 8
850 305.51 atmosphere 1000.0 10 < th dose independent sin 17 NA
860 305.62 atmosphere 1000.0 30 > th dose independent sin 17 NA
869 305.69 wind 9.0 1440 < th dose independent rect. 21 1
882 305.79 atmosphere 1010.0 720 > th dose independent rect. 13 1
890 305.79 atmosphere 1010.0 10 > th dose independent rect. 23 1