BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0634200 Os11g0634200|AK066700
         (209 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0634200  Conserved hypothetical protein                      262   1e-70
Os12g0508200  Hypothetical protein                                 67   9e-12

>Os11g0634200 Conserved hypothetical protein
          Length = 209

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 147/209 (70%)

Query: 1   MEREQMRMAILRQEQTFRQQVHELHRLYHVQKQLMKQMQIAKLNQAQAIAANAETKPKFE 60
           MEREQMRMAILRQEQTFRQQVHELHRLYHVQKQLMKQMQIAKLNQAQAIAANAETKPKFE
Sbjct: 1   MEREQMRMAILRQEQTFRQQVHELHRLYHVQKQLMKQMQIAKLNQAQAIAANAETKPKFE 60

Query: 61  ITFAENSTNXXXXXQFYSFQSSKIMSPPXXXXXXXXXXXXXXCDLQLTLXXXXXXXXXXX 120
           ITFAENSTN     QFYSFQSSKIMSPP              CDLQLTL           
Sbjct: 61  ITFAENSTNHHHHHQFYSFQSSKIMSPPAAAAAAADQEEEEECDLQLTLATGSSGGGDGT 120

Query: 121 XXXHKGKKEVRXXXXXXXXXXXXXXXXXXLAQFKNHHHHQLDCXXXXXXXXXXXRFQGES 180
              HKGKKEVR                  LAQFKNHHHHQLDC           RFQGES
Sbjct: 121 ARGHKGKKEVRSSNSDSGTAASSTSTESELAQFKNHHHHQLDCAAAAPVASPAARFQGES 180

Query: 181 KKRVVVVVDNEMSLLQPPWLNQCLSLRMA 209
           KKRVVVVVDNEMSLLQPPWLNQCLSLRMA
Sbjct: 181 KKRVVVVVDNEMSLLQPPWLNQCLSLRMA 209



>Os12g0508200 Hypothetical protein
          Length = 155

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)

Query: 1  MEREQMRMAILRQEQTFRQQVHELHRLYHVQKQLMKQMQIAKLNQAQAIAANAETKPKFE 60
          ME+E ++MAIL+QEQTFRQQV+ELHR+Y VQKQLM +MQ     QAQA A N  T P+ E
Sbjct: 1  MEKEHIKMAILKQEQTFRQQVNELHRVYRVQKQLMIEMQSIS-TQAQAKADN-RTIPRLE 58

Query: 61 I 61
          +
Sbjct: 59 M 59



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,727,941
Number of extensions: 81760
Number of successful extensions: 390
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)