BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0623700 Os11g0623700|AK063799
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0623700  Conserved hypothetical protein                       91   4e-19

>Os11g0623700 Conserved hypothetical protein
          Length = 186

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 69/186 (37%)

Query: 1   GRGRRGWAVEQAXXXXXXXXXXXXXXXXXXXLRVKASSAAAPWKXXXXXXXXXXXXXXXX 60
           GRGRRGWAVEQA                   LRVKASSAAAPWK                
Sbjct: 1   GRGRRGWAVEQASSGSGGGRCRRRPPTGAPPLRVKASSAAAPWKTPSTPPSMSPPPTTRT 60

Query: 61  XXARAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPQFLHAQHTLCXX 120
             ARAGTA                                      CPQFLHAQHTLC  
Sbjct: 61  PSARAGTALPSSSTPRSSSSRRCFTSRLRRALPSRRRAPPPRLPPLCPQFLHAQHTLCAL 120

Query: 121 XXXXXXXXXXXFFSLLRRDXXXXXXXXXXXXXXXXLPGTRVWERERITKEPXXXXXXXXX 180
                      FFSLLRRD                LPGTRVWERERITKEP         
Sbjct: 121 ASSPGPASALGFFSLLRRDSGNSSGGGGGSYSPHSLPGTRVWERERITKEPSSLLSRRRA 180

Query: 181 XXXXDG 186
               DG
Sbjct: 181 GRAADG 186



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,025,849
Number of extensions: 24087
Number of successful extensions: 24
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)