BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0621300 Os11g0621300|J033128F21
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0621300  Protein of unknown function DUF1399 family pro...   347   2e-96
AK065933                                                          330   3e-91

>Os11g0621300 Protein of unknown function DUF1399 family protein
          Length = 164

 Score =  347 bits (891), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   DVLRNLPCLYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWH 60
           DVLRNLPCLYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWH
Sbjct: 1   DVLRNLPCLYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWH 60

Query: 61  THQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGA 120
           THQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGA
Sbjct: 61  THQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGA 120

Query: 121 MYRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIEV 164
           MYRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIEV
Sbjct: 121 MYRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIEV 164



>AK065933 
          Length = 566

 Score =  330 bits (846), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/163 (95%), Positives = 157/163 (96%)

Query: 2   VLRNLPCLYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHT 61
           V R     YQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHT
Sbjct: 167 VKRQSSFFYQVDTPTMHDQRFLEEALARYKGFLYLIKTNQENKMKLFRVPTYDVDVIWHT 226

Query: 62  HQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAM 121
           HQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAM
Sbjct: 227 HQLHPATYCHDMLKLIGRVLEHDDTDDDRSEGKKLDTGFSGTTKQFENAFGARYWKAGAM 286

Query: 122 YRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIEV 164
           YRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIE+
Sbjct: 287 YRGNLPSPVTSNPQMFISEVDGEFSVGKAESQITILETTVIEL 329



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,819,970
Number of extensions: 240906
Number of successful extensions: 474
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)