BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0595200 Os11g0595200|AK106159
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0595200  PAP fibrillin family protein                        394   e-110
Os05g0304200  PAP fibrillin family protein                         94   1e-19

>Os11g0595200 PAP fibrillin family protein
          Length = 270

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/255 (82%), Positives = 210/255 (82%)

Query: 16  RPLVRRAGSRNGKLWWAGGVRKARLLSISATAAAPSGVDYXXXXXXXXXXXXXXXXXXXX 75
           RPLVRRAGSRNGKLWWAGGVRKARLLSISATAAAPSGVDY                    
Sbjct: 16  RPLVRRAGSRNGKLWWAGGVRKARLLSISATAAAPSGVDYAAGTGAAADDDAVAALKVKL 75

Query: 76  XXXXXGLNRGLAASQXXXXXXXXXXXXXXXXXXXXPVDLERDVDKLQGRWRLVYSSAFSS 135
                GLNRGLAASQ                    PVDLERDVDKLQGRWRLVYSSAFSS
Sbjct: 76  LSAVSGLNRGLAASQEDLDRADAAARELEAAAGGGPVDLERDVDKLQGRWRLVYSSAFSS 135

Query: 136 RTLGGSRPGPPTGRLLPITLGQVFQRIDVVSKDFDNIVDVELGAPWPLPPVELTATLAHK 195
           RTLGGSRPGPPTGRLLPITLGQVFQRIDVVSKDFDNIVDVELGAPWPLPPVELTATLAHK
Sbjct: 136 RTLGGSRPGPPTGRLLPITLGQVFQRIDVVSKDFDNIVDVELGAPWPLPPVELTATLAHK 195

Query: 196 FEIIGTSSIKITFDKTTVKTKGNLSQLPPLEVPRIPDNLRPPSNTGSGEFEVTYLDGDTR 255
           FEIIGTSSIKITFDKTTVKTKGNLSQLPPLEVPRIPDNLRPPSNTGSGEFEVTYLDGDTR
Sbjct: 196 FEIIGTSSIKITFDKTTVKTKGNLSQLPPLEVPRIPDNLRPPSNTGSGEFEVTYLDGDTR 255

Query: 256 ITRGDRGELRVFVIS 270
           ITRGDRGELRVFVIS
Sbjct: 256 ITRGDRGELRVFVIS 270



>Os05g0304200 PAP fibrillin family protein
          Length = 157

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 50/64 (78%), Gaps = 3/64 (4%)

Query: 140 GSRPGPPT---GRLLPITLGQVFQRIDVVSKDFDNIVDVELGAPWPLPPVELTATLAHKF 196
           GS   PP     RLLPITLGQVFQRIDVVSKDF NIVDVELG PW L PVE+ ATLAHKF
Sbjct: 86  GSSTHPPATTVARLLPITLGQVFQRIDVVSKDFGNIVDVELGGPWLLLPVEVMATLAHKF 145

Query: 197 EIIG 200
            IIG
Sbjct: 146 GIIG 149



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,185,006
Number of extensions: 332037
Number of successful extensions: 947
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)