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Os11g0595200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PAP fibrillin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0322) R2 : 0.848
β1 : -2.25 (0.118) R2dD : 0.127 R2D : 0.0765
β2 : 1.82 (0.107) R2dC : 0.179 R2C : 0.421
β3 : -1.59 (0.0837) R2dE : 0.223 R2E : 0.47
β4 : 2.87 (0.317) R2dD*C : 0.0275 R2D*C : -0.00573
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.05 (0.0684) R2dN8 : 0.105 R2N8 : 0.028
σ : 0.598
deviance : 164.87
__
_____
C
peak time of C : 9.33
E
wheather : radiation
threshold : 9.64
memory length : 66
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.68 0.603 12.6 -2.26 1.86 -1.61 2.34 -0.52 -1.04 9.2 10.59 76 -- --
164.87 0.598 12.6 -2.25 1.82 -1.59 2.87 -- -1.05 9.33 9.64 66 -- --
172.86 0.612 12.6 -2.16 1.8 -1.63 -- -1.91 -1.07 9.25 10.2 58 -- --
193.09 0.647 12.6 -2.19 1.91 -1.58 -- -- -1.04 9.31 12.58 76 -- --
246.41 0.735 12.7 -2.19 -- -2.56 -- -1.78 -0.999 -- 8.388 41 -- --
205.47 0.672 12.6 -2.28 3.33 -- 2.51 -- -0.949 10.8 -- -- -- --
231.91 0.713 12.6 -2.18 3.32 -- -- -- -0.94 10.8 -- -- -- --
265.83 0.763 12.7 -2.15 -- -2.56 -- -- -0.994 -- 8.388 41 -- --
315.75 0.828 12.6 -- 1.86 -1.5 -- -- -0.785 9.58 10 64 -- --
912.59 1.41 12.7 -2.24 -- -- -- -- -0.961 -- -- -- -- --
356.64 0.883 12.5 -- 3.33 -- -- -- -0.698 10.9 -- -- -- --
378.55 0.906 12.6 -- -- -2.63 -- -- -0.806 -- 9.981 12 -- --
1045.41 1.51 12.6 -- -- -- -- -- -0.712 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.02 temperature 20 30 > th dose independent rect. 18 12
5 157.12 temperature 15 30 > th dose dependent rect. 18 12
6 157.81 temperature 15 270 > th dose dependent rect. 16 12
8 158.58 radiation 10 90 < th dose dependent rect. 24 23
52 163.27 temperature 20 720 > th dose independent rect. 18 1
75 164.71 radiation 10 90 < th dose dependent rect. 17 22
80 164.94 temperature 20 30 > th dose independent sin 12 NA
81 164.94 temperature 25 270 > th dose independent rect. 16 4
82 164.97 wind 5 270 < th dose independent rect. 17 2
84 165.05 wind 5 90 < th dose independent rect. 17 4
87 165.31 radiation 1 90 > th dose independent sin 0 NA
93 165.53 temperature 20 720 > th dose dependent rect. 18 1
96 165.61 radiation 1 90 < th dose independent sin 0 NA
100 165.68 temperature 30 270 < th dose dependent rect. 14 11
109 165.85 radiation 10 90 < th dose dependent rect. 13 22
111 165.87 radiation 10 90 < th dose dependent rect. 15 23
112 165.89 radiation 1 30 < th dose dependent sin 23 NA
121 166.14 radiation 10 90 < th dose dependent no NA NA
122 166.16 radiation 10 90 < th dose dependent rect. 9 23
147 166.72 temperature 20 90 < th dose independent rect. 15 12
163 166.97 radiation 10 90 < th dose dependent rect. 7 14
167 167.10 radiation 10 90 < th dose dependent rect. 7 23
168 167.11 temperature 20 30 < th dose independent sin 14 NA
170 167.13 radiation 10 90 < th dose independent rect. 24 23
175 167.19 temperature 20 90 < th dose independent rect. 17 10
180 167.27 temperature 20 30 > th dose dependent rect. 18 5
202 167.59 radiation 10 90 < th dose dependent rect. 17 18
210 167.77 radiation 1 90 < th dose independent rect. 3 18
216 167.85 radiation 10 90 < th dose dependent rect. 15 20
219 167.88 radiation 1 30 < th dose independent rect. 5 18
238 168.11 radiation 10 10 < th dose dependent rect. 7 16
243 168.15 temperature 15 270 > th dose dependent rect. 16 4
247 168.20 temperature 20 10 < th dose independent rect. 16 12
256 168.25 wind 7 90 < th dose dependent rect. 17 4
262 168.29 humidity 90 30 < th dose independent rect. 23 19
268 168.36 temperature 20 10 < th dose independent rect. 14 14
307 168.65 radiation 1 270 > th dose independent rect. 4 12
319 168.68 temperature 30 270 < th dose dependent rect. 19 6
323 168.70 radiation 20 90 < th dose dependent rect. 9 12
327 168.72 wind 5 30 < th dose independent rect. 16 7
383 169.12 temperature 25 10 < th dose dependent rect. 16 10
393 169.18 radiation 30 90 < th dose dependent rect. 11 10
395 169.20 radiation 1 30 < th dose independent rect. 5 16
406 169.26 wind 9 270 < th dose dependent rect. 17 2
474 169.67 temperature 30 270 < th dose dependent rect. 21 3
486 169.72 radiation 10 10 < th dose dependent rect. 12 11
531 169.98 humidity 90 10 < th dose independent rect. 6 12
565 170.18 temperature 20 270 > th dose independent rect. 20 5
600 170.36 temperature 20 10 > th dose independent rect. 20 10
603 170.38 humidity 70 10 > th dose dependent rect. 1 22
607 170.43 temperature 15 90 > th dose dependent sin 13 NA
621 170.49 atmosphere 995 270 > th dose independent rect. 16 3
669 170.73 radiation 10 720 < th dose independent rect. 17 2
722 170.98 temperature 30 90 < th dose dependent sin 15 NA
756 171.15 atmosphere 995 270 > th dose independent rect. 24 21
787 171.30 radiation 10 90 < th dose independent rect. 7 14
810 171.44 humidity 50 10 > th dose dependent rect. 2 21
838 171.58 radiation 10 90 < th dose independent rect. 9 12
843 171.60 radiation 10 90 < th dose independent rect. 11 10
852 171.67 temperature 15 10 > th dose dependent sin 12 NA
875 171.75 radiation 10 720 < th dose independent rect. 15 4
948 171.95 wind 7 270 < th dose independent rect. 24 21