BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0581700 Os11g0581700|J090014D22
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0581700  Conserved hypothetical protein                       88   1e-18
Os03g0161600  Conserved hypothetical protein                       63   4e-11

>Os11g0581700 Conserved hypothetical protein
          Length = 111

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 46/82 (56%)

Query: 30  DSSSSLMLXXXXXXXXXXXXXXXXXXXXLIGPGSSXXXXXXXXXXXXXXXXVHVAIQPGV 89
           DSSSSLML                    LIGPGSS                VHVAIQPGV
Sbjct: 30  DSSSSLMLARRTNAAAGGGDNGDVRRRRLIGPGSSPPTCRARCGRCAPCRPVHVAIQPGV 89

Query: 90  GAQWEYYPEVWRCKCGDKLFMP 111
           GAQWEYYPEVWRCKCGDKLFMP
Sbjct: 90  GAQWEYYPEVWRCKCGDKLFMP 111



>Os03g0161600 Conserved hypothetical protein
          Length = 122

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 32/54 (59%)

Query: 58  LIGPGSSXXXXXXXXXXXXXXXXVHVAIQPGVGAQWEYYPEVWRCKCGDKLFMP 111
           L+GPGSS                VHVAIQPG     EYYPE WRCKCGDKLFMP
Sbjct: 69  LVGPGSSPPTCRSRCGGCHPCRPVHVAIQPGRSFPLEYYPEAWRCKCGDKLFMP 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,826,328
Number of extensions: 36604
Number of successful extensions: 51
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)