BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0572400 Os11g0572400|AK101277
         (480 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0572400  Similar to ST3GAL-I sialyltransferase (Fragment)    934   0.0  
Os02g0118400  Similar to CMP-N-acetylneuraminate-beta-galact...   357   1e-98

>Os11g0572400 Similar to ST3GAL-I sialyltransferase (Fragment)
          Length = 480

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/445 (100%), Positives = 445/445 (100%)

Query: 36  SIQSSFFTAPRLASRLDLDSDEVRALSGFQSRVQQCVARRGLGLTADIIDHCKLVLRFPK 95
           SIQSSFFTAPRLASRLDLDSDEVRALSGFQSRVQQCVARRGLGLTADIIDHCKLVLRFPK
Sbjct: 36  SIQSSFFTAPRLASRLDLDSDEVRALSGFQSRVQQCVARRGLGLTADIIDHCKLVLRFPK 95

Query: 96  GTNSTWYNTQFKYFEPLEYNYDVCETILLWEQYRNMTTVLTREYLDVRPDGWLDYAAKRI 155
           GTNSTWYNTQFKYFEPLEYNYDVCETILLWEQYRNMTTVLTREYLDVRPDGWLDYAAKRI
Sbjct: 96  GTNSTWYNTQFKYFEPLEYNYDVCETILLWEQYRNMTTVLTREYLDVRPDGWLDYAAKRI 155

Query: 156 AQLGADKCYNRTLCEELLSVLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAV 215
           AQLGADKCYNRTLCEELLSVLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAV
Sbjct: 156 AQLGADKCYNRTLCEELLSVLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAV 215

Query: 216 FRDNEAPVNKKYAKYVGLKRDFRLVVRGAARNMAPILKGSSDEVLIIKSLTHKEINAVIK 275
           FRDNEAPVNKKYAKYVGLKRDFRLVVRGAARNMAPILKGSSDEVLIIKSLTHKEINAVIK
Sbjct: 216 FRDNEAPVNKKYAKYVGLKRDFRLVVRGAARNMAPILKGSSDEVLIIKSLTHKEINAVIK 275

Query: 276 ELPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEWTRYFSPPRKG 335
           ELPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEWTRYFSPPRKG
Sbjct: 276 ELPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEWTRYFSPPRKG 335

Query: 336 HNPLQGRAYYQLLECLGVIRIHSPMRAKRVEDWSDIPSREEIRTAHAAAFRLKRHETGQS 395
           HNPLQGRAYYQLLECLGVIRIHSPMRAKRVEDWSDIPSREEIRTAHAAAFRLKRHETGQS
Sbjct: 336 HNPLQGRAYYQLLECLGVIRIHSPMRAKRVEDWSDIPSREEIRTAHAAAFRLKRHETGQS 395

Query: 396 DQMGPFSNCKVWGTVDPDYGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEHHVQMG 455
           DQMGPFSNCKVWGTVDPDYGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEHHVQMG
Sbjct: 396 DQMGPFSNCKVWGTVDPDYGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEHHVQMG 455

Query: 456 GVSLYKMDGNKLDDLVCVRHERSSS 480
           GVSLYKMDGNKLDDLVCVRHERSSS
Sbjct: 456 GVSLYKMDGNKLDDLVCVRHERSSS 480



>Os02g0118400 Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
           6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside
           alpha-2,6-sialyltransferase) (Alpha 2,6-ST)
           (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75)
          Length = 439

 Score =  357 bits (915), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/429 (44%), Positives = 265/429 (61%), Gaps = 35/429 (8%)

Query: 57  EVRALSGFQSRVQQCVARRGLGLTA-DIIDHCKLVLRFPKGTNSTWYNTQFKYFEPLEYN 115
           ++ AL   QS   +CV   GLGL A    D+C++V+++P  T+S W + +    E L + 
Sbjct: 38  DLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFE 97

Query: 116 YDVCETILLWEQYRNMTTVLTREYLDVRPDGWLDYAAKRIAQ-LGADKCYNRTLCEELLS 174
           +++CE +  WEQ RN TT+LT+EY+D  P+GW +YA +RI + +  +KC NRTLC E LS
Sbjct: 98  FNLCEAVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLS 157

Query: 175 VLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAVFRDNEAPVNKKYAKYVGLK 234
           ++LP  PP+ PRQF  CAVVGNSGDLLKT+FG EID++D V R+N AP+ + Y +YVG K
Sbjct: 158 LVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPI-QNYTEYVGTK 216

Query: 235 RDFRLVVRGAARNMAPI--LKGSSDEVLIIKSLTHKEINAVIKELP--NPVYLFQGIVLR 290
             FRL+ RG+A+ +  +  L  +  E LI+K+  H  +N +I+E+P  NPVYL  G    
Sbjct: 217 STFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFG 276

Query: 291 RGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEWTRYFSPPRKGHNPLQGRAYYQLLEC 350
             AKGTG+K++E ALSMCD +DMYGFTVDP Y EWTRYFS  RKGH PL GRAYYQ++EC
Sbjct: 277 SSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMEC 336

Query: 351 LGVIRIHSPMRAK--RVEDWSDIPSREEIRTAHAAAFRLKRHETGQSDQMGPFSNCKVWG 408
           LG+++IHSPMR    RV  W+  P+++ I  A  A+ +L +     S+  GP S+C    
Sbjct: 337 LGLVKIHSPMRGDPGRVVKWA--PTKDTIEAARVASEKLLKRPGAGSE--GPLSSC---- 388

Query: 409 TVDPDYGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEHHVQMGGVSLYKMDGNKLD 468
                         M + R+     K  V     +R  A +H   M G + Y ++ N   
Sbjct: 389 -------------TMIKKREKGKTPKRSV-----VRHAALKHLEYMRGATRYPLERNAGG 430

Query: 469 DLVCVRHER 477
             +C+ +ER
Sbjct: 431 GYLCMINER 439



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,194,211
Number of extensions: 698569
Number of successful extensions: 1324
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)