BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0570400 Os11g0570400|AK070108
         (219 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0570400  Conserved hypothetical protein                      348   1e-96

>Os11g0570400 Conserved hypothetical protein
          Length = 219

 Score =  348 bits (894), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 176/219 (80%)

Query: 1   MASFTPNCSTXXXXXXXXXXXXXXXXXXXEHGRVLEEDQNIRYRVEDSELPDLYYEICMY 60
           MASFTPNCST                   EHGRVLEEDQNIRYRVEDSELPDLYYEICMY
Sbjct: 1   MASFTPNCSTLFFFLVFLAAVFVSAAAASEHGRVLEEDQNIRYRVEDSELPDLYYEICMY 60

Query: 61  AREHRPCRRVMATIPDLKFKLSGQVDLALLLSHVIANRSXXXXXXXXXXXXXXXXXXGGD 120
           AREHRPCRRVMATIPDLKFKLSGQVDLALLLSHVIANRS                  GGD
Sbjct: 61  AREHRPCRRVMATIPDLKFKLSGQVDLALLLSHVIANRSAEAKALADPLLAAAAAKKGGD 120

Query: 121 ELPKCLASCAASLDDVSKAMSGLPADIDVERYPKVQSFLRNKFESGAAPPLCKSGCPDKT 180
           ELPKCLASCAASLDDVSKAMSGLPADIDVERYPKVQSFLRNKFESGAAPPLCKSGCPDKT
Sbjct: 121 ELPKCLASCAASLDDVSKAMSGLPADIDVERYPKVQSFLRNKFESGAAPPLCKSGCPDKT 180

Query: 181 STADEAAIADKFHAIWALMDCAETLAQYYVLXXXXXXKR 219
           STADEAAIADKFHAIWALMDCAETLAQYYVL      KR
Sbjct: 181 STADEAAIADKFHAIWALMDCAETLAQYYVLPPPPPPKR 219



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,100,746
Number of extensions: 210545
Number of successful extensions: 534
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)