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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0570400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0524) R2 : 0.196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.99 (0.394) R2dE : 0.185 R2E : 0.192
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.139 (0.111) R2dN8 : 0.00433 R2N8 : 0.0111
σ : 0.982
deviance : 444.45
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 10.2
memory length : 4531
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 9.39

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
436.42 0.982 3.06 0.361 0.204 1.96 -0.0523 6.58 -0.169 14.9 9.879 3822 18 9.72
443.12 0.98 3.07 0.145 0.214 3.6 -0.18 -- -0.136 14.9 10.21 4405 18.2 8.28
436.34 0.973 3.06 0.355 0.202 2.05 -- 6.92 -0.171 15 9.938 3848 18.2 9.33
443.22 0.981 3.07 0.14 0.215 3.6 -- -- -0.138 15 10.21 4392 18.3 9.4
438.65 0.975 3.06 0.348 -- 2.06 -- 7.25 -0.178 -- 9.955 3890 18.1 9.58
536.32 1.09 3.11 0.319 0.277 -- 0.135 -- -0.304 14.3 -- -- -- --
536.38 1.08 3.11 0.323 0.277 -- -- -- -0.303 14.2 -- -- -- --
444.69 0.982 3.07 0.109 -- 3.72 -- -- -0.137 -- 10.2 4531 18.6 9.37
443.47 0.981 3.08 -- 0.208 3.6 -- -- -0.155 15 10.2 4342 18.3 9.63
540.94 1.09 3.11 0.311 -- -- -- -- -0.31 -- -- -- -- --
539.12 1.09 3.12 -- 0.27 -- -- -- -0.339 14.2 -- -- -- --
444.45 0.982 3.07 -- -- 3.99 -- -- -0.139 -- 10.2 4531 18.6 9.39
543.49 1.09 3.12 -- -- -- -- -- -0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 440.78 wind 9 4320 > th dose dependent rect. 18 8
3 440.80 wind 9 4320 > th dose dependent rect. 18 6
7 440.86 wind 9 4320 > th dose independent rect. 18 6
13 440.94 wind 9 4320 > th dose independent rect. 18 3
15 442.04 wind 9 4320 < th dose independent rect. 18 3
16 442.40 wind 9 4320 < th dose independent rect. 18 8
30 444.88 wind 5 4320 > th dose dependent rect. 20 3
79 450.68 radiation 20 1440 > th dose independent rect. 6 1
151 453.99 temperature 20 720 < th dose independent rect. 17 2
174 455.47 humidity 90 1440 < th dose dependent rect. 3 1
182 457.02 wind 7 4320 < th dose independent rect. 8 1
192 457.73 humidity 80 1440 < th dose independent rect. 22 1
199 459.20 atmosphere 995 14400 > th dose independent rect. 16 1
202 459.37 wind 7 4320 > th dose independent rect. 8 1
205 459.53 humidity 90 1440 < th dose dependent rect. 24 7
207 460.02 atmosphere 995 14400 > th dose independent rect. 7 13
211 460.13 atmosphere 995 14400 > th dose independent rect. 16 4
214 460.20 atmosphere 995 14400 > th dose independent rect. 12 8
218 460.24 atmosphere 995 14400 < th dose independent rect. 15 4
239 460.41 atmosphere 995 14400 < th dose independent rect. 16 1
283 460.65 atmosphere 995 14400 < th dose dependent rect. 15 4
289 460.66 atmosphere 995 14400 < th dose dependent rect. 16 1
302 460.73 atmosphere 995 14400 > th dose independent rect. 13 2
311 460.82 atmosphere 995 14400 > th dose independent rect. 7 8
329 460.98 humidity 90 1440 < th dose dependent rect. 24 4
428 462.10 humidity 80 90 < th dose independent rect. 21 9
461 463.13 humidity 70 1440 > th dose dependent rect. 1 6
483 463.57 radiation 1 14400 < th dose dependent rect. 23 2
494 463.97 humidity 60 1440 > th dose dependent rect. 1 3
503 464.09 radiation 1 14400 < th dose dependent rect. 23 5
518 464.24 humidity 70 1440 > th dose dependent rect. 2 1
571 464.89 atmosphere 995 14400 > th dose independent rect. 19 21
572 464.89 temperature 20 720 < th dose dependent rect. 19 1
574 464.96 humidity 80 10 < th dose independent rect. 20 11
620 465.66 radiation 20 1440 < th dose independent rect. 18 13
639 466.06 atmosphere 995 14400 > th dose independent sin 22 NA
660 466.31 atmosphere 995 14400 < th dose independent sin 22 NA
661 466.32 wind 5 1440 > th dose dependent rect. 8 1
671 466.46 radiation 20 1440 < th dose independent rect. 6 1
708 467.13 atmosphere 995 14400 > th dose independent sin 4 NA
714 467.31 radiation 20 1440 < th dose independent rect. 24 7
725 467.43 radiation 20 1440 < th dose independent rect. 3 4
742 467.58 humidity 80 270 < th dose dependent rect. 21 9
747 467.64 atmosphere 995 14400 < th dose dependent sin 23 NA
776 468.19 radiation 1 14400 < th dose dependent rect. 19 9
777 468.21 atmosphere 995 14400 < th dose independent sin 4 NA
787 468.33 humidity 90 1440 < th dose dependent rect. 5 1
798 468.58 radiation 1 14400 < th dose dependent rect. 19 7
811 468.68 humidity 80 1440 > th dose dependent rect. 5 1
814 468.70 humidity 80 1440 > th dose independent rect. 22 1