BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0568700 Os11g0568700|AK099671
(549 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0568700 Hypothetical protein 1075 0.0
>Os11g0568700 Hypothetical protein
Length = 549
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/549 (94%), Positives = 520/549 (94%)
Query: 1 MVAAMEKRREIRELRDRMDRTXXXXXXXXXXXXRSLVKRQILASSLSAGNDEGNIDLIAE 60
MVAAMEKRREIRELRDRMDRT RSLVKRQILASSLSAGNDEGNIDLIAE
Sbjct: 1 MVAAMEKRREIRELRDRMDRTLALPDLADEELLRSLVKRQILASSLSAGNDEGNIDLIAE 60
Query: 61 ARSKEISNFLEMLNTSGNERSSKIHEASHKEWKVKQDTDQLRVMYREGPEGTPFHTLLAE 120
ARSKEISNFLEMLNTSGNERSSKIHEASHKEWKVKQDTDQLRVMYREGPEGTPFHTLLAE
Sbjct: 61 ARSKEISNFLEMLNTSGNERSSKIHEASHKEWKVKQDTDQLRVMYREGPEGTPFHTLLAE 120
Query: 121 GFADGPIDVCTCVSWESSLYKKWFPQYNLPTFKVAQSGCLKKVRVGEEISLVRVKVPWPV 180
GFADGPIDVCTCVSWESSLYKKWFPQYNLPTFKVAQSGCLKKVRVGEEISLVRVKVPWPV
Sbjct: 121 GFADGPIDVCTCVSWESSLYKKWFPQYNLPTFKVAQSGCLKKVRVGEEISLVRVKVPWPV 180
Query: 181 SEREALLHYFELEYLKEDLVIVIMKTISDTDNINIETHGFSRDGIPEAGDTVRIDVVGGF 240
SEREALLHYFELEYLKEDLVIVIMKTISDTDNINIETHGFSRDGIPEAGDTVRIDVVGGF
Sbjct: 181 SEREALLHYFELEYLKEDLVIVIMKTISDTDNINIETHGFSRDGIPEAGDTVRIDVVGGF 240
Query: 241 VLQRITKEKSFFRAIANMDIKLDFVPPWLINFISRQLIGSGHKLYQKAVSTVANCDEDYK 300
VLQRITKEKSFFRAIANMDIKLDFVPPWLINFISRQLIGSGHKLYQKAVSTVANCDEDYK
Sbjct: 241 VLQRITKEKSFFRAIANMDIKLDFVPPWLINFISRQLIGSGHKLYQKAVSTVANCDEDYK 300
Query: 301 KALREPLYVRIREHRGSTDIANVTPVEERATEALPDNPTLQNVLAVTNITSNSEIVEEES 360
KALREPLYVRIREHRGSTDIANVTPVEERATEALPDNPTLQNVLAVTNITSNSEIVEEES
Sbjct: 301 KALREPLYVRIREHRGSTDIANVTPVEERATEALPDNPTLQNVLAVTNITSNSEIVEEES 360
Query: 361 EQKALFKLDHHAIGPSNPPAEQEQHVENKPYISPEVEQALNILDKAIAIIRGNNAGSASV 420
EQKALFKLDHHAIGPSNPPAEQEQHVENKPYISPEVEQALNILDKAIAIIRGNNAGSASV
Sbjct: 361 EQKALFKLDHHAIGPSNPPAEQEQHVENKPYISPEVEQALNILDKAIAIIRGNNAGSASV 420
Query: 421 VQKFIGYDVTLDGSTTDSRNSHNIPNEHPATLPPRDSRETQHTYSLSNENVNHREKDALD 480
VQKFIGYDVTLDGSTTDSRNSHNIPNEHPATLPPRDSRETQHTYSLSNENVNHREKDALD
Sbjct: 421 VQKFIGYDVTLDGSTTDSRNSHNIPNEHPATLPPRDSRETQHTYSLSNENVNHREKDALD 480
Query: 481 SDSQRYTTAXXXXXXXXXXXXXXXXXHGEESLDTNGLHQNGFHKDKESKRTRKRKTNSWL 540
SDSQRYTTA HGEESLDTNGLHQNGFHKDKESKRTRKRKTNSWL
Sbjct: 481 SDSQRYTTASTVTKTMSMTRRSTTRVHGEESLDTNGLHQNGFHKDKESKRTRKRKTNSWL 540
Query: 541 CCLTPSTTG 549
CCLTPSTTG
Sbjct: 541 CCLTPSTTG 549
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,578,017
Number of extensions: 704726
Number of successful extensions: 1560
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 443
Effective length of database: 11,501,117
Effective search space: 5094994831
Effective search space used: 5094994831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)