BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0552500 Os11g0552500|Os11g0552500
         (345 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0552500  Conserved hypothetical protein                      362   e-100

>Os11g0552500 Conserved hypothetical protein
          Length = 345

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/235 (80%), Positives = 188/235 (80%)

Query: 111 VLLSKILHVKAASNRKPAALQSSESFSFKKVXXXXXXPSPCSTKHHPLXXXXXXXXXXXX 170
           VLLSKILHVKAASNRKPAALQSSESFSFKKV      PSPCSTKHHPL            
Sbjct: 111 VLLSKILHVKAASNRKPAALQSSESFSFKKVAAAAAAPSPCSTKHHPLDAAAAADEKEEE 170

Query: 171 XXXXXXXXXXXKQFSPVSVLDHPFDFESSPIHKRSPSRVAQPQGSPKNAMAFVRDLLEAA 230
                      KQFSPVSVLDHPFDFESSPIHKRSPSRVAQPQGSPKNAMAFVRDLLEAA
Sbjct: 171 IEYTDSESDDEKQFSPVSVLDHPFDFESSPIHKRSPSRVAQPQGSPKNAMAFVRDLLEAA 230

Query: 231 YSPALLTHLLSKTDDLINXXXXXXXXXXXXXXXXXXCCYHHESDGGELAPAAAYWEAQRA 290
           YSPALLTHLLSKTDDLIN                  CCYHHESDGGELAPAAAYWEAQRA
Sbjct: 231 YSPALLTHLLSKTDDLINATADAAAAAASDDDDDDDCCYHHESDGGELAPAAAYWEAQRA 290

Query: 291 ELTRVSAMVASEVPSSSRIGAADVRPERDGVGADLEAAVLDQLLHELAVELAGGR 345
           ELTRVSAMVASEVPSSSRIGAADVRPERDGVGADLEAAVLDQLLHELAVELAGGR
Sbjct: 291 ELTRVSAMVASEVPSSSRIGAADVRPERDGVGADLEAAVLDQLLHELAVELAGGR 345




 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MASLSASPSGRRLSELLEEKQEPFYLDLHLLEKGCSPRLLDGYDT 45
          MASLSASPSGRRLSELLEEKQEPFYLDLHLLEKGCSPRLLDGYDT
Sbjct: 1  MASLSASPSGRRLSELLEEKQEPFYLDLHLLEKGCSPRLLDGYDT 45



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,093,226
Number of extensions: 261934
Number of successful extensions: 726
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)