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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0552500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0672) R2 : 0.402
β1 : -4.37 (0.377) R2dD : 0.772 R2D : -0.306
β2 : 1.63 (0.13) R2dC : 0.209 R2C : 0.0875
β3 : 1.02 (0.184) R2dE : 0.0541 R2E : -0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.47 (1.1) R2dD*E : 0.324 R2D*E : -0.479
γ1 : -0.997 (0.143) R2dN8 : 0.151 R2N8 : -0.132
σ : 0.94
deviance : 407.22
__
_____
C
peak time of C : 7.31
E
wheather : temperature
threshold : 21.3
memory length : 4525
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
405.99 0.947 4.14 -4.38 1.63 1.02 -0.677 -8.49 -1 7.31 21.3 4536 -- --
446.08 0.984 3.85 -2.3 1.63 1.18 -0.909 -- -0.534 7.45 -22.47 8395 -- --
407.22 0.94 4.14 -4.37 1.63 1.02 -- -8.47 -0.997 7.31 21.3 4525 -- --
447.37 0.985 3.85 -2.3 1.61 1.2 -- -- -0.558 7.4 -33.47 8434 -- --
546.26 1.09 4.14 -3.9 -- 0.83 -- -7.08 -0.881 -- 17.3 4375 -- --
469.65 1.02 3.77 -1.64 1.62 -- -0.754 -- -0.204 7.29 -- -- -- --
471.18 1.02 3.77 -1.66 1.62 -- -- -- -0.203 7.27 -- -- -- --
584.55 1.13 3.89 -2.3 -- 1.25 -- -- -0.543 -- -32.33 8576 -- --
540.96 1.08 3.74 -- 1.64 0.385 -- -- -0.0598 7.46 -34.86 931 -- --
610.38 1.15 3.81 -1.63 -- -- -- -- -0.175 -- -- -- -- --
543.75 1.09 3.73 -- 1.6 -- -- -- -0.0181 7.34 -- -- -- --
637.28 1.18 3.7 -- -- -1.06 -- -- 0.325 -- -55.06 46865 -- --
680.55 1.22 3.77 -- -- -- -- -- 0.00552 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 383.59 wind 7 43200 < th dose dependent rect. 14 2
2 383.76 wind 7 43200 < th dose dependent rect. 13 4
4 383.94 wind 5 43200 < th dose independent rect. 15 2
6 384.03 atmosphere 1005 43200 > th dose independent rect. 16 11
12 384.31 atmosphere 1005 43200 > th dose independent rect. 16 15
16 384.34 atmosphere 1005 43200 > th dose independent rect. 14 18
37 384.48 atmosphere 1005 43200 > th dose independent sin 14 NA
47 384.58 atmosphere 1005 43200 < th dose independent rect. 16 11
67 384.72 atmosphere 1005 43200 > th dose independent rect. 6 21
86 384.83 atmosphere 1005 43200 < th dose independent rect. 15 16
98 384.85 atmosphere 1005 43200 > th dose independent rect. 24 22
127 384.92 atmosphere 1005 43200 > th dose independent rect. 9 23
128 384.92 atmosphere 1005 43200 > th dose independent rect. 16 23
130 384.93 atmosphere 1005 43200 > th dose independent no NA NA
142 384.94 atmosphere 1005 43200 > th dose independent rect. 21 23
163 384.98 wind 5 43200 < th dose independent rect. 14 5
178 385.01 atmosphere 1005 43200 > th dose independent rect. 17 5
182 385.02 wind 5 43200 > th dose independent rect. 15 2
185 385.02 wind 1 43200 > th dose dependent rect. 14 3
220 385.13 wind 3 43200 > th dose dependent rect. 15 1
221 385.14 atmosphere 1005 43200 < th dose independent sin 14 NA
270 385.27 atmosphere 1005 43200 < th dose independent rect. 17 5
288 385.34 atmosphere 1005 43200 < th dose independent rect. 6 21
296 385.38 atmosphere 1005 43200 < th dose independent rect. 24 21
353 385.48 wind 3 43200 > th dose independent rect. 13 1
402 385.56 atmosphere 1005 43200 < th dose independent no NA NA
451 385.66 atmosphere 1005 43200 < th dose independent rect. 6 16
462 385.69 wind 7 43200 < th dose dependent rect. 13 8
499 385.79 atmosphere 1005 43200 < th dose independent rect. 1 1
509 385.81 atmosphere 1005 43200 > th dose independent rect. 1 1
561 385.97 radiation 1 43200 < th dose independent rect. 18 11
591 386.08 wind 5 43200 > th dose independent rect. 14 5
827 387.22 temperature 15 43200 > th dose dependent rect. 8 1
828 387.23 atmosphere 1005 43200 > th dose independent rect. 23 11
837 387.27 atmosphere 1005 43200 > th dose independent rect. 12 3
876 387.40 radiation 1 43200 < th dose independent rect. 18 1
877 387.40 radiation 1 43200 < th dose independent rect. 18 3
879 387.40 radiation 1 43200 < th dose independent rect. 18 7
923 387.55 radiation 1 43200 > th dose independent rect. 18 11
940 387.61 temperature 20 43200 > th dose dependent rect. 11 1