BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0550900 Os11g0550900|AK106291
         (375 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0550900  Conserved hypothetical protein                      635   0.0  
Os11g0551350  Hypothetical protein                                 82   7e-16

>Os11g0550900 Conserved hypothetical protein
          Length = 375

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/375 (85%), Positives = 319/375 (85%)

Query: 1   MILQQKXXXXXXXXXXXXXXXXXXXXXPSERGIGNXXXXXXXXXXXXXXXXXXXXFRSTR 60
           MILQQK                     PSERGIGN                    FRSTR
Sbjct: 1   MILQQKPARARRPPPPFHARRRRLGLRPSERGIGNATPPRAAPPPSPAGSAGCARFRSTR 60

Query: 61  RLGIAPSCSSLTAILAQGRVVGLGGCKVVFFPLLAAAAGDSRGRQNAGVLHRPVGGHPRG 120
           RLGIAPSCSSLTAILAQGRVVGLGGCKVVFFPLLAAAAGDSRGRQNAGVLHRPVGGHPRG
Sbjct: 61  RLGIAPSCSSLTAILAQGRVVGLGGCKVVFFPLLAAAAGDSRGRQNAGVLHRPVGGHPRG 120

Query: 121 LLPHDDDMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQVNKELKDAMTQLDSIR 180
           LLPHDDDMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQVNKELKDAMTQLDSIR
Sbjct: 121 LLPHDDDMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQVNKELKDAMTQLDSIR 180

Query: 181 YEVQNLSRFTPGQFMRQHNPVGVDHEAEKNDAVDGSALNLEELRHQIRSMVHDEIESFYK 240
           YEVQNLSRFTPGQFMRQHNPVGVDHEAEKNDAVDGSALNLEELRHQIRSMVHDEIESFYK
Sbjct: 181 YEVQNLSRFTPGQFMRQHNPVGVDHEAEKNDAVDGSALNLEELRHQIRSMVHDEIESFYK 240

Query: 241 TNPDKFSGRLDNADTVNRSGPVEGKEADVAVIPTMLASKDMKLANTGSTDLHSKATMYSR 300
           TNPDKFSGRLDNADTVNRSGPVEGKEADVAVIPTMLASKDMKLANTGSTDLHSKATMYSR
Sbjct: 241 TNPDKFSGRLDNADTVNRSGPVEGKEADVAVIPTMLASKDMKLANTGSTDLHSKATMYSR 300

Query: 301 LTESPEMSGSSGHQFKESDGLLNILPISAESAGLLPSRSDKPQGSDXXXXXXXXXXXXXX 360
           LTESPEMSGSSGHQFKESDGLLNILPISAESAGLLPSRSDKPQGSD              
Sbjct: 301 LTESPEMSGSSGHQFKESDGLLNILPISAESAGLLPSRSDKPQGSDLLLEATLEAEVAEH 360

Query: 361 XKSFAQQHHDELHKE 375
            KSFAQQHHDELHKE
Sbjct: 361 AKSFAQQHHDELHKE 375



>Os11g0551350 Hypothetical protein
          Length = 89

 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/45 (88%), Positives = 41/45 (91%)

Query: 121 LLPHDDDMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQV 165
           L+    DMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQV
Sbjct: 18  LMMKRSDMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQV 62



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,600,765
Number of extensions: 433512
Number of successful extensions: 1138
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1137
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 273
Effective length of database: 11,709,973
Effective search space: 3196822629
Effective search space used: 3196822629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)