BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0550300 Os11g0550300|AK103228
         (47 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0550300  Conserved hypothetical protein                       95   1e-20
Os12g0185900  Conserved hypothetical protein                       80   4e-16
Os02g0502401  Conserved hypothetical protein                       75   1e-14

>Os11g0550300 Conserved hypothetical protein
          Length = 47

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  KESKFGTFGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA 47
          KESKFGTFGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA
Sbjct: 1  KESKFGTFGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA 47



>Os12g0185900 Conserved hypothetical protein
          Length = 90

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 41/47 (87%)

Query: 1  KESKFGTFGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA 47
          KESKFGT GYVKF+SCT GF KVFRT SMSLVRGFRL TS INRGGA
Sbjct: 44 KESKFGTIGYVKFVSCTRGFSKVFRTLSMSLVRGFRLLTSGINRGGA 90



>Os02g0502401 Conserved hypothetical protein
          Length = 99

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 38/47 (80%)

Query: 1  KESKFGTFGYVKFLSCTSGFPKVFRTPSMSLVRGFRLPTSCINRGGA 47
          KESKFG  GY+KF+SCT  FP   RT SMSLVRGFRLPTSCINR GA
Sbjct: 53 KESKFGMIGYLKFVSCTRRFPMGIRTSSMSLVRGFRLPTSCINREGA 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,890,712
Number of extensions: 52959
Number of successful extensions: 74
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 3
Length of query: 47
Length of database: 17,035,801
Length adjustment: 20
Effective length of query: 27
Effective length of database: 15,991,521
Effective search space: 431771067
Effective search space used: 431771067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)