BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0546300 Os11g0546300|AK121962
         (367 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0546300  Patatin family protein                              626   e-180

>Os11g0546300 Patatin family protein
          Length = 367

 Score =  626 bits (1615), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/335 (93%), Positives = 312/335 (93%)

Query: 33  RGFRRFMLARAAAGRDPEPPPLPEGTEKRSLAVRTGEVFXXXXXXXXXXXXXXXXXXXXX 92
           RGFRRFMLARAAAGRDPEPPPLPEGTEKRSLAVRTGEVF                     
Sbjct: 33  RGFRRFMLARAAAGRDPEPPPLPEGTEKRSLAVRTGEVFLGLAALLVRAGRGGGAAVEEV 92

Query: 93  XXKDGVVWEQRPEDVEAERRRRELTGPGFSFSAAGLLFPYHIGVAQCLIDRGYLTERTPL 152
             KDGVVWEQRPEDVEAERRRRELTGPGFSFSAAGLLFPYHIGVAQCLIDRGYLTERTPL
Sbjct: 93  EAKDGVVWEQRPEDVEAERRRRELTGPGFSFSAAGLLFPYHIGVAQCLIDRGYLTERTPL 152

Query: 153 AGSSAGAIICAVIASGNTMRDALQVTKDLADNCRSNGTAFRLGAVLKDVLDRFLPDDVHI 212
           AGSSAGAIICAVIASGNTMRDALQVTKDLADNCRSNGTAFRLGAVLKDVLDRFLPDDVHI
Sbjct: 153 AGSSAGAIICAVIASGNTMRDALQVTKDLADNCRSNGTAFRLGAVLKDVLDRFLPDDVHI 212

Query: 213 RCNGRIRVAITQLSWRPRGLLVDQFDSKDDVISAVITSSFIPGYLAPRPATFFRNRLCID 272
           RCNGRIRVAITQLSWRPRGLLVDQFDSKDDVISAVITSSFIPGYLAPRPATFFRNRLCID
Sbjct: 213 RCNGRIRVAITQLSWRPRGLLVDQFDSKDDVISAVITSSFIPGYLAPRPATFFRNRLCID 272

Query: 273 GGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCNPENRASPRQLFNWALEPAEDEV 332
           GGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCNPENRASPRQLFNWALEPAEDEV
Sbjct: 273 GGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCNPENRASPRQLFNWALEPAEDEV 332

Query: 333 LDKLYELGYLDAAVWADQNQVELIVKNEQPLRVTD 367
           LDKLYELGYLDAAVWADQNQVELIVKNEQPLRVTD
Sbjct: 333 LDKLYELGYLDAAVWADQNQVELIVKNEQPLRVTD 367



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,118,528
Number of extensions: 522011
Number of successful extensions: 1613
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1612
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,709,973
Effective search space: 3103142845
Effective search space used: 3103142845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)