BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0535100 Os11g0535100|Os11g0535100
         (117 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0535100                                                      201   8e-53
Os06g0627900                                                      194   2e-50
Os08g0288800                                                      124   1e-29

>Os11g0535100 
          Length = 117

 Score =  201 bits (512), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 103/117 (88%), Positives = 103/117 (88%)

Query: 1   MGGKGFQRDEVVKPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA 60
           MGGKGFQRDEVVKPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA
Sbjct: 1   MGGKGFQRDEVVKPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA 60

Query: 61  SREDSKLRMEAADGSHLSELQKSIQAVAWSSXXXXXXXXTPGIEVDDXXXXXXSPLP 117
           SREDSKLRMEAADGSHLSELQKSIQAVAWSS        TPGIEVDD      SPLP
Sbjct: 61  SREDSKLRMEAADGSHLSELQKSIQAVAWSSGGGGRRRRTPGIEVDDGGGGGGSPLP 117



>Os06g0627900 
          Length = 116

 Score =  194 bits (492), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 102/117 (87%), Gaps = 1/117 (0%)

Query: 1   MGGKGFQRDEVVKPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA 60
           MGGKGFQRDEV+KPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA
Sbjct: 1   MGGKGFQRDEVLKPVLDSPSPVITIHKLSSGLGRQWWLQASKMRTDDSTWQESRQTTAAA 60

Query: 61  SREDSKLRMEAADGSHLSELQKSIQAVAWSSXXXXXXXXTPGIEVDDXXXXXXSPLP 117
           SREDSKLRMEAADGSHLSELQKSIQAVAWSS        TPG+EVDD       PLP
Sbjct: 61  SREDSKLRMEAADGSHLSELQKSIQAVAWSSGGGGRRRRTPGVEVDD-GGGGGGPLP 116



>Os08g0288800 
          Length = 68

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 29 SSGLGRQWWLQASKMRTDDSTWQESRQTTAAASREDSKLRMEAADGSHLSELQKSIQAVA 88
          SSGLGRQWWLQASKMRTDDSTWQESRQTTAAASREDSKLRMEAADGSHLSELQKSIQAVA
Sbjct: 6  SSGLGRQWWLQASKMRTDDSTWQESRQTTAAASREDSKLRMEAADGSHLSELQKSIQAVA 65

Query: 89 WSS 91
          WSS
Sbjct: 66 WSS 68



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.124    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,832,904
Number of extensions: 130434
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)