FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0535100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0244) R2 : 0.0103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.112 (0.0514) R2dN8 : 0.0133 R2N8 : 0.0103
σ : 0.459
deviance : 96.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.47 0.447 3.35 0.36 0.176 0.162 -0.312 1.48 0.111 5.88 79 5869 -- --
93 0.449 3.35 0.218 0.184 0.266 -0.336 -- 0.0138 5.6 84.08 7310 -- --
90.69 0.444 3.34 0.365 0.176 0.156 -- 1.52 0.117 5.97 80 5914 -- --
93.26 0.45 3.35 0.204 0.178 0.259 -- -- 0.0121 5.88 84.22 7310 -- --
92.28 0.447 3.35 0.372 -- 0.152 -- 1.51 0.121 -- 80 5883 -- --
94.26 0.455 3.33 0.161 0.178 -- -0.336 -- 0.125 5.79 -- -- -- --
94.53 0.455 3.33 0.159 0.177 -- -- -- 0.126 6 -- -- -- --
94.81 0.453 3.35 0.209 -- 0.274 -- -- 0.0161 -- 84.31 6966 -- --
94.35 0.452 3.35 -- 0.184 0.235 -- -- 0.0122 5.76 84.22 7001 -- --
96.15 0.458 3.33 0.164 -- -- -- -- 0.13 -- -- -- -- --
95.19 0.456 3.33 -- 0.179 -- -- -- 0.108 5.96 -- -- -- --
95.91 0.456 3.35 -- -- 0.226 -- -- 0.0139 -- 84.35 6966 -- --
96.86 0.459 3.33 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.99 humidity 90.0 30 < th dose independent rect. 22 1
2 78.08 wind 9.0 1440 < th dose independent rect. 23 1
3 78.08 temperature 10.0 1440 > th dose independent rect. 23 1
6 78.08 temperature 30.0 1440 < th dose independent rect. 23 1
10 78.08 humidity 50.0 1440 > th dose independent rect. 23 1
20 78.08 atmosphere 995.0 1440 > th dose independent rect. 23 1
21 78.08 radiation 1.0 1440 < th dose independent rect. 23 1
41 78.08 temperature 10.0 1440 > th dose independent rect. 24 23
44 78.08 radiation 1.0 1440 < th dose dependent rect. 23 1
49 78.11 atmosphere 1005.0 30 > th dose dependent rect. 22 1
50 78.12 temperature 25.0 30 > th dose dependent rect. 22 1
53 78.14 humidity 90.0 30 < th dose dependent rect. 22 1
54 78.16 temperature 25.0 30 > th dose independent rect. 22 1
55 78.16 atmosphere 1005.0 30 > th dose independent rect. 22 1
59 78.19 wind 1.0 30 > th dose independent rect. 22 1
60 78.23 precipitation 0.1 30 < th dose independent rect. 22 1
61 78.23 precipitation 0.1 30 < th dose dependent rect. 22 1
63 78.26 wind 5.0 30 < th dose independent rect. 22 1
66 78.26 temperature 10.0 30 > th dose independent rect. 22 1
68 78.26 temperature 30.0 30 < th dose independent rect. 22 1
69 78.26 humidity 50.0 30 > th dose independent rect. 22 1
72 78.26 atmosphere 995.0 30 > th dose independent rect. 22 1
73 78.26 atmosphere 1010.0 30 < th dose independent rect. 22 1
75 78.26 radiation 1.0 30 < th dose independent rect. 22 1
80 78.26 temperature 10.0 30 > th dose independent rect. 23 23
81 78.26 radiation 1.0 30 < th dose dependent rect. 22 1
87 78.28 wind 9.0 30 < th dose dependent rect. 22 1
92 78.39 humidity 50.0 30 > th dose dependent rect. 22 1
95 78.46 wind 1.0 30 > th dose dependent rect. 22 1
99 78.68 atmosphere 1015.0 30 < th dose dependent rect. 22 1
103 78.97 temperature 30.0 30 < th dose dependent rect. 22 1
112 79.53 wind 9.0 30 < th dose independent rect. 23 23
170 84.17 atmosphere 995.0 30 > th dose independent rect. 23 23
173 86.42 precipitation 0.1 30 < th dose independent rect. 23 23
174 86.42 precipitation 0.1 30 < th dose dependent rect. 23 23
182 87.39 temperature 10.0 720 > th dose independent rect. 15 8
183 87.39 temperature 10.0 720 > th dose independent rect. 23 16
184 87.41 temperature 10.0 720 > th dose independent rect. 3 8
185 87.41 atmosphere 995.0 720 > th dose independent rect. 3 8
186 87.41 temperature 10.0 720 > th dose independent rect. 11 16
189 87.56 atmosphere 995.0 720 > th dose independent rect. 23 16
190 87.57 wind 9.0 720 < th dose independent rect. 3 8
191 87.83 precipitation 0.1 1440 < th dose independent rect. 23 1
192 87.83 precipitation 0.1 1440 < th dose dependent rect. 23 1
193 87.85 atmosphere 1015.0 720 < th dose independent rect. 3 8
195 88.01 humidity 50.0 720 > th dose independent rect. 3 8
196 88.21 precipitation 0.1 720 < th dose independent rect. 15 8
197 88.21 precipitation 0.1 720 < th dose dependent rect. 15 8
198 88.33 radiation 40.0 720 < th dose independent rect. 15 8
205 88.74 humidity 50.0 30 > th dose independent rect. 23 23
207 88.83 precipitation 0.1 720 < th dose independent rect. 11 16
208 88.83 precipitation 0.1 720 < th dose dependent rect. 11 16
212 89.07 wind 9.0 720 < th dose independent rect. 15 8
216 89.29 humidity 80.0 14400 < th dose dependent rect. 2 7
217 89.33 precipitation 0.1 720 < th dose independent rect. 3 8
219 89.33 precipitation 0.1 720 < th dose dependent rect. 3 8
221 89.37 temperature 25.0 720 > th dose dependent rect. 3 6
225 89.40 temperature 25.0 720 > th dose dependent rect. 24 9
228 89.44 temperature 10.0 30 > th dose dependent rect. 23 23
235 89.54 temperature 25.0 720 > th dose dependent rect. 23 11
236 89.57 precipitation 0.1 720 < th dose independent rect. 23 16
237 89.57 precipitation 0.1 720 < th dose dependent rect. 23 16
241 89.66 atmosphere 995.0 720 > th dose independent rect. 11 16
243 89.70 atmosphere 995.0 720 > th dose independent rect. 15 8
244 89.70 atmosphere 1015.0 30 < th dose independent rect. 23 23
254 89.79 radiation 10.0 30 < th dose dependent rect. 23 23
259 89.82 temperature 25.0 30 > th dose dependent rect. 16 19
274 89.96 wind 9.0 720 < th dose independent rect. 23 16
277 90.01 atmosphere 1000.0 90 > th dose independent rect. 23 12
281 90.05 humidity 70.0 14400 > th dose independent rect. 8 1
289 90.11 wind 5.0 14400 < th dose independent rect. 11 1
291 90.13 temperature 25.0 720 > th dose independent rect. 3 7
292 90.14 temperature 25.0 720 > th dose independent rect. 8 1
299 90.21 temperature 25.0 30 > th dose dependent rect. 24 11
310 90.30 humidity 70.0 14400 < th dose independent rect. 8 1
324 90.35 humidity 70.0 14400 > th dose independent rect. 4 5
325 90.35 humidity 70.0 14400 > th dose independent rect. 24 9
326 90.36 temperature 30.0 14400 < th dose independent rect. 14 1
330 90.36 humidity 70.0 14400 > th dose independent rect. 22 11
339 90.39 temperature 30.0 14400 > th dose independent rect. 11 1
344 90.40 temperature 30.0 14400 < th dose independent rect. 11 5
345 90.41 temperature 30.0 14400 < th dose independent rect. 11 1
349 90.41 temperature 30.0 14400 > th dose independent rect. 11 5
353 90.42 atmosphere 1000.0 720 > th dose independent rect. 21 14
357 90.46 wind 5.0 14400 > th dose independent rect. 11 1
360 90.47 temperature 30.0 14400 > th dose independent rect. 14 1
361 90.47 wind 1.0 14400 < th dose dependent rect. 6 1
365 90.48 wind 3.0 14400 > th dose dependent rect. 11 1
386 90.50 temperature 30.0 14400 < th dose independent rect. 11 17
428 90.55 wind 5.0 14400 < th dose independent rect. 10 5
432 90.55 temperature 30.0 14400 < th dose independent rect. 14 8
435 90.55 temperature 30.0 14400 < th dose independent rect. 14 10
436 90.55 atmosphere 1000.0 720 > th dose independent rect. 23 10
441 90.55 temperature 30.0 14400 < th dose independent rect. 14 14
468 90.56 temperature 30.0 14400 < th dose independent rect. 3 13
475 90.56 temperature 30.0 14400 < th dose independent rect. 23 17
479 90.56 temperature 30.0 14400 < th dose independent rect. 20 20
482 90.56 wind 7.0 14400 < th dose dependent rect. 11 1
483 90.56 temperature 30.0 14400 > th dose dependent rect. 14 1
505 90.57 wind 9.0 720 < th dose independent rect. 11 16
518 90.58 temperature 30.0 14400 < th dose independent sin 17 NA
553 90.59 temperature 30.0 14400 > th dose independent sin 17 NA
686 90.62 temperature 30.0 14400 < th dose independent rect. 14 23
691 90.63 wind 5.0 14400 > th dose independent rect. 10 5
705 90.63 temperature 30.0 14400 < th dose independent rect. 3 21
714 90.64 temperature 30.0 14400 < th dose independent no NA NA
821 90.64 temperature 30.0 14400 > th dose independent rect. 14 23
836 90.64 radiation 10.0 30 < th dose independent rect. 23 23
837 90.64 atmosphere 995.0 30 > th dose dependent rect. 23 23
839 90.65 temperature 30.0 14400 > th dose independent no NA NA
843 90.65 precipitation 0.1 14400 > th dose independent rect. 24 9
939 90.66 precipitation 0.1 14400 < th dose independent rect. 24 8
944 90.66 precipitation 0.1 14400 < th dose dependent rect. 24 8