BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0531300 Os11g0531300|AK105999
         (445 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0531300  Similar to Universal minicircle sequence bindi...   718   0.0  

>Os11g0531300 Similar to Universal minicircle sequence binding protein
          Length = 445

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/379 (93%), Positives = 356/379 (93%)

Query: 67  TERSHYXXXXXXXXXXXXXXXXXXXXXXXCICGRGGCDVEERELGRWAYVCPATPKCKYS 126
           TERSHY                       CICGRGGCDVEERELGRWAYVCPATPKCKYS
Sbjct: 67  TERSHYEAQRRASAPPPPPSQPPAFFERPCICGRGGCDVEERELGRWAYVCPATPKCKYS 126

Query: 127 VWCGEADICPNPQPAYMSHPKPNPHVFSSPCSPVVFNSPSNHLAGSTTPTPNNLQVFNGP 186
           VWCGEADICPNPQPAYMSHPKPNPHVFSSPCSPVVFNSPSNHLAGSTTPTPNNLQVFNGP
Sbjct: 127 VWCGEADICPNPQPAYMSHPKPNPHVFSSPCSPVVFNSPSNHLAGSTTPTPNNLQVFNGP 186

Query: 187 RNPHVSNSPSNHLAGSTTPTPNNLQVFNAPGNLHVSNSPNNHRSGATTPVNANPPGSRSS 246
           RNPHVSNSPSNHLAGSTTPTPNNLQVFNAPGNLHVSNSPNNHRSGATTPVNANPPGSRSS
Sbjct: 187 RNPHVSNSPSNHLAGSTTPTPNNLQVFNAPGNLHVSNSPNNHRSGATTPVNANPPGSRSS 246

Query: 247 DKQPICHCRAGKCKVETIKGQKYYVCCIQKGQGACPYQVPVNAFVEESPQAGNSVPLEDN 306
           DKQPICHCRAGKCKVETIKGQKYYVCCIQKGQGACPYQVPVNAFVEESPQAGNSVPLEDN
Sbjct: 247 DKQPICHCRAGKCKVETIKGQKYYVCCIQKGQGACPYQVPVNAFVEESPQAGNSVPLEDN 306

Query: 307 RGNYSPVKVEANNDNGSINPDQPEYDEWPFDIVNNDVVCSGFLPTAEPTLRDGIVAGESP 366
           RGNYSPVKVEANNDNGSINPDQPEYDEWPFDIVNNDVVCSGFLPTAEPTLRDGIVAGESP
Sbjct: 307 RGNYSPVKVEANNDNGSINPDQPEYDEWPFDIVNNDVVCSGFLPTAEPTLRDGIVAGESP 366

Query: 367 STQHLSNATTEAKTPTKSPIMPPPHGSGSPFTPRSNPCYRCGEDGHWSRNCPKPASSPLN 426
           STQHLSNATTEAKTPTKSPIMPPPHGSGSPFTPRSNPCYRCGEDGHWSRNCPKPASSPLN
Sbjct: 367 STQHLSNATTEAKTPTKSPIMPPPHGSGSPFTPRSNPCYRCGEDGHWSRNCPKPASSPLN 426

Query: 427 SPCYNCGKLGHWRGNCPGT 445
           SPCYNCGKLGHWRGNCPGT
Sbjct: 427 SPCYNCGKLGHWRGNCPGT 445



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,387,997
Number of extensions: 969707
Number of successful extensions: 4573
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4574
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)