Os11g0531300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Universal minicircle sequence binding protein.
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Os11g0531300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Universal minicircle sequence binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.72 | 0.247 | 11.3 | 0.0376 | 0.0476 | 1.02 | -0.232 | 0.555 | -0.188 | 1.14 | 8.71 | 4171 | -- | -- |
| 28.01 | 0.246 | 11.3 | -0.0904 | 0.0395 | 1 | -0.209 | -- | -0.219 | 0.522 | 10.61 | 4109 | -- | -- |
| 27.83 | 0.246 | 11.3 | 0.0308 | 0.0669 | 1.02 | -- | 0.483 | -0.193 | 4.18 | 9.934 | 4127 | -- | -- |
| 28.03 | 0.247 | 11.3 | -0.0787 | 0.0724 | 1.01 | -- | -- | -0.219 | 5.28 | 8.781 | 3955 | -- | -- |
| 28.06 | 0.247 | 11.3 | 0.0363 | -- | 1.03 | -- | 0.508 | -0.19 | -- | 9.382 | 4103 | -- | -- |
| 46.12 | 0.318 | 11.2 | 0.372 | 0.13 | -- | -0.142 | -- | -0.0259 | 2.65 | -- | -- | -- | -- |
| 46.18 | 0.318 | 11.2 | 0.375 | 0.131 | -- | -- | -- | -0.0252 | 3.04 | -- | -- | -- | -- |
| 28.28 | 0.248 | 11.3 | -0.0499 | -- | 0.942 | -- | -- | -0.218 | -- | 17.18 | 3996 | -- | -- |
| 28.14 | 0.247 | 11.3 | -- | 0.0757 | 0.975 | -- | -- | -0.208 | 5.16 | 9.321 | 3914 | -- | -- |
| 47.16 | 0.321 | 11.2 | 0.381 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 49.89 | 0.33 | 11.3 | -- | 0.139 | -- | -- | -- | -0.067 | 3.05 | -- | -- | -- | -- |
| 28.32 | 0.248 | 11.3 | -- | -- | 0.905 | -- | -- | -0.208 | -- | 17.74 | 3997 | -- | -- |
| 50.99 | 0.333 | 11.3 | -- | -- | -- | -- | -- | -0.064 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 27.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 8 | 27.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 12 | 27.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 13 | 27.60 | temperature | 10 | 4320 | > th | dose dependent | sin | 7 | NA |
| 33 | 27.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 43 | 27.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 64 | 27.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 65 | 27.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 102 | 27.69 | temperature | 30 | 4320 | < th | dose dependent | sin | 8 | NA |
| 123 | 27.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 217 | 27.78 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 234 | 27.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 244 | 27.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 262 | 27.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 611 | 27.98 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 652 | 27.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 654 | 27.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 23 |
| 676 | 28.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 759 | 28.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 779 | 28.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 4 |