BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0525800 Os11g0525800|AK059719
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0525800  Similar to ADL308Cp                                 404   e-113
Os04g0635800  GCN5-related N-acetyltransferase domain contai...    67   1e-11

>Os11g0525800 Similar to ADL308Cp
          Length = 197

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MSAAAAEATERGEPSGGGGEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWP 60
           MSAAAAEATERGEPSGGGGEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWP
Sbjct: 1   MSAAAAEATERGEPSGGGGEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWP 60

Query: 61  QLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMM 120
           QLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMM
Sbjct: 61  QLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMM 120

Query: 121 ESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNGVDAFRLKLLFPRPDPGMHPM 180
           ESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNGVDAFRLKLLFPRPDPGMHPM
Sbjct: 121 ESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNGVDAFRLKLLFPRPDPGMHPM 180

Query: 181 MMLGNERDDQHMDSPYL 197
           MMLGNERDDQHMDSPYL
Sbjct: 181 MMLGNERDDQHMDSPYL 197



>Os04g0635800 GCN5-related N-acetyltransferase domain containing protein
          Length = 198

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 43  LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGA-FRGYIAMLVVLKP 101
           L E Y +  Y Y +  WPQL F+A D   G+ VG V+ KM E       G+I  L VL+ 
Sbjct: 23  LPENYQMKYYLYHMLSWPQLLFVAED-YGGRIVGYVLAKMEEDPSEPCHGHITSLAVLRS 81

Query: 102 YRGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALY-GRLGFIRAKRLYRYYLN 159
           +R  G+AT+L++ +   M +  G E V+L    +N+ A  LY   LG+       +YY +
Sbjct: 82  HRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLYTSTLGYQIHDVEAKYYAD 141

Query: 160 GVDAFRLKLLFPRPDP 175
           G DA+ ++    +P P
Sbjct: 142 GEDAYDMRKPLRQPQP 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,324,290
Number of extensions: 309857
Number of successful extensions: 1175
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)