BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0507400 Os11g0507400|AK120224
(569 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0507400 Conserved hypothetical protein 1009 0.0
>Os11g0507400 Conserved hypothetical protein
Length = 569
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/532 (92%), Positives = 491/532 (92%)
Query: 38 GPELPSSSTARASPFRGELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVERMGEEAAG 97
GPELPSSSTARASPFRGEL VERMGEEAAG
Sbjct: 38 GPELPSSSTARASPFRGELSEARDSDDGEAAAAAVEAGGGASTTGAACATVERMGEEAAG 97
Query: 98 RGSPEAASLRVRELIRRHFLLHGASRVRELPAYEFCKQGFVLGKASEAGFGNEMYKILTA 157
RGSPEAASLRVRELIRRHFLLHGASRVRELPAYEFCKQGFVLGKASEAGFGNEMYKILTA
Sbjct: 98 RGSPEAASLRVRELIRRHFLLHGASRVRELPAYEFCKQGFVLGKASEAGFGNEMYKILTA 157
Query: 158 AALSVMLNRSLIIGQTRGLYPFGEYISYTNHSFTIGEVKHLWRKNRCARTYGRNLSMRVD 217
AALSVMLNRSLIIGQTRGLYPFGEYISYTNHSFTIGEVKHLWRKNRCARTYGRNLSMRVD
Sbjct: 158 AALSVMLNRSLIIGQTRGLYPFGEYISYTNHSFTIGEVKHLWRKNRCARTYGRNLSMRVD 217
Query: 218 NFEHPTETNVLCSDWNSWKDPIIWFDGTTDAVGIQFFLKNVHARMKTAASSLFGSPGSLR 277
NFEHPTETNVLCSDWNSWKDPIIWFDGTTDAVGIQFFLKNVHARMKTAASSLFGSPGSLR
Sbjct: 218 NFEHPTETNVLCSDWNSWKDPIIWFDGTTDAVGIQFFLKNVHARMKTAASSLFGSPGSLR 277
Query: 278 ARPNTFGELMQVIISPSQTVEKAVQWALKGSSPDIVLHMRMMTNRPVRARKAAVNCIKRA 337
ARPNTFGELMQVIISPSQTVEKAVQWALKGSSPDIVLHMRMMTNRPVRARKAAVNCIKRA
Sbjct: 278 ARPNTFGELMQVIISPSQTVEKAVQWALKGSSPDIVLHMRMMTNRPVRARKAAVNCIKRA 337
Query: 338 IEICHLKGTPRVAVISDTPGFAKDIKQDISEFAEVIYFDHKKFSRSFDLEITGSEKALDF 397
IEICHLKGTPRVAVISDTPGFAKDIKQDISEFAEVIYFDHKKFSRSFDLEITGSEKALDF
Sbjct: 338 IEICHLKGTPRVAVISDTPGFAKDIKQDISEFAEVIYFDHKKFSRSFDLEITGSEKALDF 397
Query: 398 RSRDWGSAPRWAAFVDFFLASQARYAVVTGAHRRVGTTYXXXXXXXXXXNRFGRESSGTN 457
RSRDWGSAPRWAAFVDFFLASQARYAVVTGAHRRVGTTY NRFGRESSGTN
Sbjct: 398 RSRDWGSAPRWAAFVDFFLASQARYAVVTGAHRRVGTTYAQLIAALAAANRFGRESSGTN 457
Query: 458 FTFLSSVHSNLLVDGLSSQGGWGHIWNRYAGPLSCQHQQHQCALTPLLAPAWWDGQWQSP 517
FTFLSSVHSNLLVDGLSSQGGWGHIWNRYAGPLSCQHQQHQCALTPLLAPAWWDGQWQSP
Sbjct: 458 FTFLSSVHSNLLVDGLSSQGGWGHIWNRYAGPLSCQHQQHQCALTPLLAPAWWDGQWQSP 517
Query: 518 IPRDVRRLLEYGVRLSNTGEVDERHLMSYCRSRKDHVKRYRVLPSYNSSMQL 569
IPRDVRRLLEYGVRLSNTGEVDERHLMSYCRSRKDHVKRYRVLPSYNSSMQL
Sbjct: 518 IPRDVRRLLEYGVRLSNTGEVDERHLMSYCRSRKDHVKRYRVLPSYNSSMQL 569
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,474,772
Number of extensions: 714102
Number of successful extensions: 1640
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1639
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 463
Effective length of database: 11,501,117
Effective search space: 5325017171
Effective search space used: 5325017171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)