BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0506800 Os11g0506800|014-054-H03
         (455 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0506800  IQ calmodulin-binding region domain containing...   286   2e-77

>Os11g0506800 IQ calmodulin-binding region domain containing protein
          Length = 455

 Score =  286 bits (733), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 190/427 (44%), Positives = 190/427 (44%)

Query: 1   MASSSRRFFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRHASPRFFPAAAADEEYRYG 60
           MASSSRRFFG                            RRRHASPRFFPAAAADEEYRYG
Sbjct: 1   MASSSRRFFGYDPYDYYYTSSPYDYAYPYYTPAPAATDRRRHASPRFFPAAAADEEYRYG 60

Query: 61  EPVETXXXXXXXXXXXXXXXXXXXXXXXQFAGSETKAKAKGCESEMSPPRSVARIGREXX 120
           EPVET                       QFAGSETKAKAKGCESEMSPPRSVARIGRE  
Sbjct: 61  EPVETVDVLRPSSSRRSRARPVSVSVPVQFAGSETKAKAKGCESEMSPPRSVARIGREAA 120

Query: 121 XXXXXXXXXGFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALGEAXXXXXX 180
                    GFL                                    VALGEA      
Sbjct: 121 AVRVQAAARGFLARRMVREVRAVEAEAEGVARKVAAEAEALRRDARGRVALGEALMRLLL 180

Query: 181 XXDAVHGAREYRRRVTKRVLALQDAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXLDMEE 240
             DAVHGAREYRRRVTKRVLALQDAVDAL                          LDMEE
Sbjct: 181 RLDAVHGAREYRRRVTKRVLALQDAVDALEHVPAAPPVEEEEEEARVVADDAAPALDMEE 240

Query: 241 AHDAQEDMMTPSPAQDASQLXXXXXXXXXXXXMEENEMAPGSPRAEEEHGXXXXXXXXXX 300
           AHDAQEDMMTPSPAQDASQL            MEENEMAPGSPRAEEEHG          
Sbjct: 241 AHDAQEDMMTPSPAQDASQLADDAPAAVDAVDMEENEMAPGSPRAEEEHGVEAEPKPEVE 300

Query: 301 XXXXXAGTEMEVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLXXXX 360
                AGTEMEVD                                        SPL    
Sbjct: 301 IPVPEAGTEMEVDGGQATGGEAETEKAVEQVVGGEMQEAEEEAEGEWEMVTAESPLEAAA 360

Query: 361 XXXXXXXXXXXXXXXXRVDEPAVQDXXXXXXXXXXXXXXXXXXAALCERSAQQCAVIGAL 420
                           RVDEPAVQD                  AALCERSAQQCAVIGAL
Sbjct: 361 ADDDVEAVESSAAPAARVDEPAVQDEEKEKEEGVEMKKVMEMVAALCERSAQQCAVIGAL 420

Query: 421 AERVDAL 427
           AERVDAL
Sbjct: 421 AERVDAL 427



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,000,916
Number of extensions: 112582
Number of successful extensions: 117
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)