FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0506800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.0574) R2 : 0.607
β1 : -0.215 (0.21) R2dD : 0.00121 R2D : -0.000744
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.22 (0.125) R2dE : 0.599 R2E : 0.584
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2 (0.506) R2dD*E : 0.0148 R2D*E : 0.0159
γ1 : -0.302 (0.124) R2dN8 : 0.0075 R2N8 : -0.0106
σ : 1.07
deviance : 528.81
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 25.92
memory length : 46
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.05
open length of G : 22.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
518.75 1.07 4.44 -0.198 0.501 -2.96 -1.53 -3.18 -0.282 9.1 26.6 46 7.05 22.9
539.29 1.08 4.44 -0.272 0.457 -2.97 1.15 -- -0.299 9.88 26.78 48 7.08 22.8
521.5 1.06 4.44 -0.251 0.421 -3.14 -- -2.23 -0.314 7.28 26.21 46 7.02 22.9
542.67 1.08 4.45 -0.247 0.355 -3.19 -- -- -0.352 6.59 25.28 48 7.06 22.8
528.81 1.07 4.46 -0.215 -- -3.22 -- -2 -0.302 -- 25.92 46 7.05 22.8
728.18 1.27 4.28 -0.184 3.11 -- 1.56 -- 0.148 11.5 -- -- -- --
738.61 1.27 4.28 -0.121 3.11 -- -- -- 0.154 11.4 -- -- -- --
548.26 1.09 4.45 -0.235 -- -3.24 -- -- -0.33 -- 25.34 46 7.1 22.8
544.3 1.09 4.44 -- 0.368 -3.17 -- -- -0.315 6.68 25.17 49 7.07 22.8
1344.32 1.71 4.35 -0.203 -- -- -- -- 0.121 -- -- -- -- --
739 1.27 4.28 -- 3.11 -- -- -- 0.167 11.4 -- -- -- --
548.59 1.09 4.43 -- -- -3.25 -- -- -0.248 -- 26.13 51 7.28 22.5
1345.41 1.71 4.35 -- -- -- -- -- 0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 532.35 radiation 30 30 < th dose dependent rect. 7 23
6 565.62 radiation 10 30 < th dose dependent sin 4 NA
8 568.70 radiation 30 30 < th dose dependent rect. 9 21
15 573.12 radiation 10 30 < th dose independent rect. 7 23
17 574.58 radiation 30 30 < th dose dependent sin 8 NA
19 575.12 wind 5 30 < th dose dependent rect. 6 8
23 576.61 wind 3 30 < th dose independent rect. 6 8
24 576.86 radiation 1 30 > th dose dependent sin 10 NA
30 577.45 wind 7 30 < th dose dependent rect. 6 11
63 584.92 radiation 10 30 < th dose dependent no NA NA
64 584.93 radiation 10 30 < th dose dependent rect. 15 23
65 585.07 radiation 10 30 < th dose dependent rect. 11 23
66 585.11 radiation 10 30 < th dose dependent rect. 13 23
70 585.35 wind 3 90 < th dose independent rect. 6 11
78 586.36 wind 9 270 < th dose dependent rect. 4 11
96 589.53 temperature 25 10 > th dose independent rect. 6 4
109 590.91 wind 3 30 < th dose independent rect. 6 6
116 591.37 radiation 1 90 > th dose independent sin 3 NA
130 592.16 radiation 1 90 < th dose independent sin 3 NA
145 593.35 temperature 10 10 > th dose dependent rect. 6 20
159 595.20 radiation 10 30 < th dose dependent rect. 2 12
170 595.81 wind 7 720 < th dose dependent rect. 5 2
213 598.08 radiation 30 30 < th dose dependent rect. 2 12
224 598.46 radiation 10 30 < th dose dependent rect. 21 23
277 601.86 radiation 10 30 < th dose dependent rect. 23 23
293 603.09 humidity 70 720 > th dose dependent rect. 5 2
301 603.31 wind 5 30 < th dose dependent rect. 6 6
346 604.92 wind 7 30 < th dose dependent rect. 6 20
369 605.46 temperature 15 10 > th dose dependent rect. 6 10
390 606.35 wind 3 90 < th dose dependent rect. 6 15
456 608.90 humidity 90 10 < th dose independent rect. 6 10
474 609.37 wind 3 90 < th dose independent rect. 6 17
496 609.90 radiation 10 30 < th dose dependent rect. 1 23
506 610.25 radiation 20 90 < th dose independent rect. 11 18
537 611.45 temperature 25 30 < th dose independent rect. 2 8
571 612.28 temperature 20 270 > th dose dependent rect. 6 1
582 612.61 radiation 1 90 < th dose independent rect. 1 9
585 612.65 radiation 1 90 > th dose independent rect. 4 13
613 612.93 radiation 10 90 < th dose dependent rect. 1 18
645 613.58 wind 3 30 < th dose independent rect. 6 20
667 613.97 humidity 80 720 > th dose independent rect. 5 2
678 614.28 temperature 20 10 > th dose dependent rect. 6 4
684 614.42 radiation 1 90 < th dose independent rect. 1 16
727 615.40 temperature 25 30 < th dose independent sin 5 NA
742 615.86 temperature 25 30 > th dose independent sin 5 NA
756 616.09 radiation 1 90 < th dose independent rect. 1 18
772 616.35 wind 9 270 < th dose dependent rect. 3 21
798 616.93 radiation 10 90 < th dose dependent rect. 23 20
816 617.39 radiation 20 10 < th dose independent rect. 2 12
824 617.62 radiation 10 30 > th dose independent rect. 15 23
881 618.94 radiation 20 10 > th dose independent sin 10 NA
888 619.14 temperature 20 10 > th dose dependent rect. 6 2
913 619.33 temperature 25 30 < th dose independent rect. 24 10
954 619.95 temperature 25 30 < th dose independent rect. 2 14