BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0503400 Os11g0503400|AK066621
         (502 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0503400  Armadillo-like helical domain containing protein    961   0.0  

>Os11g0503400 Armadillo-like helical domain containing protein
          Length = 502

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/502 (95%), Positives = 477/502 (95%)

Query: 1   MLGWTDPADREIRMLAAIIVGHVASNINLSQFPGALQSIGSLLDPRDDLSFYDQDDQHDH 60
           MLGWTDPADREIRMLAAIIVGHVASNINLSQFPGALQSIGSLLDPRDDLSFYDQDDQHDH
Sbjct: 1   MLGWTDPADREIRMLAAIIVGHVASNINLSQFPGALQSIGSLLDPRDDLSFYDQDDQHDH 60

Query: 61  DKGMGRCQLLVQGLLVIERLTCDHNNCILICRDHCLLSHIRYAIRLRKKVTFPDMCPVWP 120
           DKGMGRCQLLVQGLLVIERLTCDHNNCILICRDHCLLSHIRYAIRLRKKVTFPDMCPVWP
Sbjct: 61  DKGMGRCQLLVQGLLVIERLTCDHNNCILICRDHCLLSHIRYAIRLRKKVTFPDMCPVWP 120

Query: 121 EMLKGSLRAMAYLIAGVTEVELETLESIFNELPLGMIMGHKRFPDIMIPTIALYANLLYY 180
           EMLKGSLRAMAYLIAGVTEVELETLESIFNELPLGMIMGHKRFPDIMIPTIALYANLLYY
Sbjct: 121 EMLKGSLRAMAYLIAGVTEVELETLESIFNELPLGMIMGHKRFPDIMIPTIALYANLLYY 180

Query: 181 RDTTFPSEHFFETMLPVFLSCTDIEQGEEITSVWTKXXXXXXXXXXXXXXXXEDSVSRDD 240
           RDTTFPSEHFFETMLPVFLSCTDIEQGEEITSVWTK                EDSVSRDD
Sbjct: 181 RDTTFPSEHFFETMLPVFLSCTDIEQGEEITSVWTKVGVLAGASLAKLLLKSEDSVSRDD 240

Query: 241 IMKGEQVFDGLTKLLTAPNTTIREIAAEILQHVYFHDYTHRLSLTEKLVAELFRTNSQMG 300
           IMKGEQVFDGLTKLLTAPNTTIREIAAEILQHVYFHDYTHRLSLTEKLVAELFRTNSQMG
Sbjct: 241 IMKGEQVFDGLTKLLTAPNTTIREIAAEILQHVYFHDYTHRLSLTEKLVAELFRTNSQMG 300

Query: 301 TQAQSGALAITVEAEHDGVKQFLGDNAQTSSLNRLEHEEQSNYTELQTTLLHVLASTTEH 360
           TQAQSGALAITVEAEHDGVKQFLGDNAQTSSLNRLEHEEQSNYTELQTTLLHVLASTTEH
Sbjct: 301 TQAQSGALAITVEAEHDGVKQFLGDNAQTSSLNRLEHEEQSNYTELQTTLLHVLASTTEH 360

Query: 361 GTDCLANVIQKIAPGDGLSRFVGMLKSLVEKHSRVVTEDGLIIIKATAWLIMWMLRRSEF 420
           GTDCLANVIQKIAPGDGLSRFVGMLKSLVEKHSRVVTEDGLIIIKATAWLIMWMLRRSEF
Sbjct: 361 GTDCLANVIQKIAPGDGLSRFVGMLKSLVEKHSRVVTEDGLIIIKATAWLIMWMLRRSEF 420

Query: 421 VQEIRQQKIVEALPEATKIVSRTSLTKKKQPASDLDIWKLLGYNIYYKRFASNIXXXXXX 480
           VQEIRQQKIVEALPEATKIVSRTSLTKKKQPASDLDIWKLLGYNIYYKRFASNI      
Sbjct: 421 VQEIRQQKIVEALPEATKIVSRTSLTKKKQPASDLDIWKLLGYNIYYKRFASNIRLSSRL 480

Query: 481 XXXVEDAQDELVRQQEVTVQVE 502
              VEDAQDELVRQQEVTVQVE
Sbjct: 481 SSLVEDAQDELVRQQEVTVQVE 502



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,890,224
Number of extensions: 556378
Number of successful extensions: 1273
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)