BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0498400 Os11g0498400|AK060702
         (306 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0498400  Zinc finger, C2H2-type domain containing protein    559   e-160

>Os11g0498400 Zinc finger, C2H2-type domain containing protein
          Length = 306

 Score =  559 bits (1441), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/306 (89%), Positives = 274/306 (89%)

Query: 1   MQQKPAAEAMEEELKGEAVGPXXXXXXXXXXXXXXXXXXXXFFAAGDMERELLAKQVALD 60
           MQQKPAAEAMEEELKGEAVGP                    FFAAGDMERELLAKQVALD
Sbjct: 1   MQQKPAAEAMEEELKGEAVGPRRPGLGLWLAARRRLAPDDPFFAAGDMERELLAKQVALD 60

Query: 61  LSEDERYQLERMEVASANALLCPISGCGAHLDCLENFEDHYRTRHTASCSVCWRVYPTSR 120
           LSEDERYQLERMEVASANALLCPISGCGAHLDCLENFEDHYRTRHTASCSVCWRVYPTSR
Sbjct: 61  LSEDERYQLERMEVASANALLCPISGCGAHLDCLENFEDHYRTRHTASCSVCWRVYPTSR 120

Query: 121 LLSIHISEAHDSFFQAKVARGFPMYECLVEGCGVKLKSYKSRQQHLLDKHQFPKSFEFFK 180
           LLSIHISEAHDSFFQAKVARGFPMYECLVEGCGVKLKSYKSRQQHLLDKHQFPKSFEFFK
Sbjct: 121 LLSIHISEAHDSFFQAKVARGFPMYECLVEGCGVKLKSYKSRQQHLLDKHQFPKSFEFFK 180

Query: 181 KARPSXXXXXXXXXXXXTVHKGDETSETLMDVDGKKSSRYMNSRYRPKQHDGKESKENEH 240
           KARPS            TVHKGDETSETLMDVDGKKSSRYMNSRYRPKQHDGKESKENEH
Sbjct: 181 KARPSQRQRNKNQKQRQTVHKGDETSETLMDVDGKKSSRYMNSRYRPKQHDGKESKENEH 240

Query: 241 SSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRGLAFVPRSIRQNKQV 300
           SSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRGLAFVPRSIRQNKQV
Sbjct: 241 SSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRGLAFVPRSIRQNKQV 300

Query: 301 SQTEPK 306
           SQTEPK
Sbjct: 301 SQTEPK 306



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,074,441
Number of extensions: 327537
Number of successful extensions: 1106
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)