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Os11g0498400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.25 (0.0176) R2 : 0.325
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.637 (0.0441) R2dC : 0.309 R2C : 0.299
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0371) R2dN8 : 0.0257 R2N8 : 0.0159
σ : 0.333
deviance : 50.62
__
_____
C
peak time of C : 3.15
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.38 0.295 9.19 0.684 0.422 0.689 0.201 -1.09 0.0971 3.43 28.66 56 -- --
40.76 0.297 9.21 0.554 0.406 0.77 -0.0287 -- 0.081 3.02 28.87 149 -- --
39.47 0.293 9.19 0.662 0.42 0.705 -- -0.93 0.0931 3.5 28.55 53 -- --
40.67 0.297 9.21 0.508 0.402 0.735 -- -- 0.0523 3 28.5 160 -- --
46 0.316 9.18 0.754 -- 1.1 -- -0.948 0.159 -- 30.11 37 -- --
47.87 0.324 9.25 0.32 0.632 -- -0.0899 -- -0.101 3.15 -- -- -- --
47.9 0.324 9.25 0.322 0.631 -- -- -- -0.1 3.15 -- -- -- --
47.02 0.319 9.2 0.608 -- 1.11 -- -- 0.126 -- 29.65 122 -- --
46.65 0.32 9.23 -- 0.485 0.504 -- -- -0.045 3.51 28.49 145 -- --
70.57 0.393 9.24 0.348 -- -- -- -- -0.0838 -- -- -- -- --
50.62 0.333 9.25 -- 0.637 -- -- -- -0.136 3.15 -- -- -- --
55.9 0.349 9.22 -- -- 0.905 -- -- 0.0249 -- 29.8 121 -- --
73.78 0.401 9.25 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.64 temperature 25 270 < th dose dependent sin 22 NA
3 37.97 temperature 25 270 < th dose dependent rect. 8 13
19 38.52 temperature 30 10 < th dose dependent rect. 19 21
22 38.58 humidity 50 14400 < th dose dependent rect. 17 18
32 38.78 temperature 15 90 > th dose dependent rect. 20 23
42 38.91 humidity 50 14400 > th dose independent rect. 17 17
44 38.92 humidity 50 14400 < th dose independent rect. 12 1
47 38.92 temperature 30 30 < th dose dependent rect. 23 23
53 38.97 temperature 30 1440 < th dose dependent rect. 11 1
60 39.01 temperature 10 1440 > th dose dependent rect. 11 1
62 39.02 temperature 30 270 < th dose dependent rect. 6 23
67 39.07 temperature 30 720 < th dose dependent rect. 2 18
77 39.11 humidity 80 720 > th dose dependent rect. 10 3
79 39.11 temperature 30 90 < th dose dependent rect. 9 23
84 39.15 wind 7 43200 > th dose independent rect. 20 1
88 39.18 humidity 60 14400 < th dose dependent rect. 17 16
97 39.22 humidity 50 14400 > th dose independent rect. 12 1
102 39.25 temperature 15 270 > th dose dependent rect. 1 23
103 39.25 temperature 30 270 < th dose dependent rect. 2 23
112 39.32 wind 7 43200 < th dose independent rect. 20 1
113 39.32 humidity 60 14400 < th dose independent rect. 17 16
121 39.36 temperature 30 270 < th dose dependent rect. 23 23
124 39.37 temperature 30 720 < th dose dependent rect. 3 14
127 39.38 temperature 30 10 < th dose dependent rect. 6 23
128 39.38 temperature 30 10 < th dose dependent rect. 11 23
130 39.39 wind 7 43200 > th dose dependent rect. 20 1
138 39.42 temperature 25 720 < th dose dependent rect. 7 8
139 39.42 temperature 30 30 < th dose dependent rect. 15 23
140 39.43 temperature 30 30 < th dose dependent no NA NA
150 39.44 temperature 15 10 > th dose dependent rect. 5 23
157 39.45 temperature 30 30 < th dose dependent rect. 13 23
159 39.46 temperature 30 270 < th dose dependent no NA NA
187 39.55 temperature 15 10 > th dose dependent rect. 1 23
195 39.56 temperature 25 10 < th dose dependent rect. 6 18
200 39.57 temperature 25 10 < th dose dependent rect. 6 14
203 39.58 humidity 80 720 > th dose dependent rect. 9 5
209 39.58 temperature 30 270 < th dose dependent rect. 15 23
223 39.64 humidity 50 14400 < th dose independent rect. 17 18
237 39.67 temperature 15 10 > th dose dependent rect. 5 14
239 39.68 temperature 10 270 > th dose dependent sin 23 NA
263 39.71 temperature 10 720 > th dose dependent rect. 21 20
265 39.71 temperature 15 270 > th dose dependent rect. 4 23
266 39.72 temperature 10 30 > th dose dependent sin 21 NA
282 39.75 humidity 50 14400 > th dose independent rect. 16 19
290 39.76 temperature 15 14400 > th dose independent rect. 7 1
291 39.76 humidity 60 14400 < th dose independent rect. 17 3
298 39.77 temperature 20 270 < th dose independent sin 23 NA
300 39.77 humidity 80 10 > th dose dependent rect. 11 9
332 39.81 temperature 25 10 < th dose dependent rect. 10 10
335 39.81 temperature 25 10 < th dose dependent rect. 4 20
346 39.83 humidity 80 720 > th dose dependent rect. 11 1
357 39.84 temperature 20 270 > th dose independent sin 23 NA
358 39.84 temperature 15 30 > th dose dependent no NA NA
390 39.86 humidity 50 14400 < th dose dependent rect. 14 23
409 39.88 temperature 15 90 > th dose dependent rect. 7 23
419 39.89 humidity 50 14400 < th dose dependent rect. 17 22
422 39.90 humidity 50 14400 < th dose independent rect. 8 6
439 39.90 humidity 50 14400 < th dose dependent rect. 12 4
478 39.93 atmosphere 1005 1440 > th dose dependent rect. 16 1
497 39.94 temperature 30 30 < th dose dependent rect. 21 23
503 39.95 humidity 50 14400 < th dose dependent rect. 9 7
523 39.95 humidity 50 14400 < th dose dependent rect. 12 22
535 39.97 humidity 50 14400 < th dose dependent sin 9 NA
556 39.97 atmosphere 1010 1440 > th dose dependent rect. 16 18
582 39.99 humidity 50 14400 < th dose dependent rect. 12 6
605 40.00 wind 9 43200 > th dose dependent rect. 17 4
615 40.01 humidity 50 14400 < th dose dependent sin 0 NA
617 40.01 humidity 50 14400 < th dose dependent no NA NA
620 40.01 wind 5 43200 > th dose dependent rect. 18 3
734 40.01 temperature 30 10 < th dose dependent rect. 3 23
755 40.02 humidity 50 14400 < th dose dependent sin 22 NA
770 40.03 humidity 80 720 > th dose independent rect. 10 2
795 40.05 humidity 60 14400 < th dose dependent rect. 17 3
826 40.06 temperature 20 270 < th dose independent rect. 5 17
828 40.06 humidity 50 14400 < th dose dependent rect. 8 2
892 40.08 humidity 60 14400 > th dose independent rect. 17 3
909 40.09 temperature 30 10 < th dose dependent rect. 19 19
953 40.12 atmosphere 1010 1440 > th dose dependent sin 11 NA
1000 40.14 humidity 60 14400 > th dose independent rect. 17 6