BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0470500 Os11g0470500|Os11g0470500
         (266 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0470500  Protein of unknown function DUF26 domain conta...   260   9e-70

>Os11g0470500 Protein of unknown function DUF26 domain containing protein
          Length = 266

 Score =  260 bits (664), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 145/241 (60%), Positives = 145/241 (60%)

Query: 26  DPQITLLNLGCSQYXXXXXXXXXXXXXXXXXVLRANLSSXXXXXXXXXXXXXXXXXXXXX 85
           DPQITLLNLGCSQY                 VLRANLSS                     
Sbjct: 26  DPQITLLNLGCSQYNATPAAAFLAALNATFAVLRANLSSAGGGGGFATAAEPRAAAPAFA 85

Query: 86  XXQCRPYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILDGCVVRYESAAFFDGPATLPG 145
             QCRPYV                             ILDGCVVRYESAAFFDGPATLPG
Sbjct: 86  MAQCRPYVAGAGSCAACFDAAASRLRARCGAANGGRAILDGCVVRYESAAFFDGPATLPG 145

Query: 146 NTQVCNGTAVADGSFAGAARGLXXXXXXXXXXXXXXXXXXXXXXXXXXXQCVETVGEGGC 205
           NTQVCNGTAVADGSFAGAARGL                           QCVETVGEGGC
Sbjct: 146 NTQVCNGTAVADGSFAGAARGLVGDLAAAAPRAPGLAAAAARGGVYAAAQCVETVGEGGC 205

Query: 206 AQCLPVPARNIDGCPPDSDGRAVDAGCFMRYSDKPFFPANATIDLAPYLRSPDVFGLTKW 265
           AQCLPVPARNIDGCPPDSDGRAVDAGCFMRYSDKPFFPANATIDLAPYLRSPDVFGLTKW
Sbjct: 206 AQCLPVPARNIDGCPPDSDGRAVDAGCFMRYSDKPFFPANATIDLAPYLRSPDVFGLTKW 265

Query: 266 V 266
           V
Sbjct: 266 V 266



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,711,393
Number of extensions: 189058
Number of successful extensions: 389
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)