BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0459700 Os11g0459700|Os11g0459700
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0459700  Hypothetical protein                                237   1e-63
Os08g0361500                                                      104   2e-23
Os05g0194700                                                       65   8e-12

>Os11g0459700 Hypothetical protein
          Length = 115

 Score =  237 bits (605), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MSLLVDVKTRLVNLRNDAWQPLFEEDPFSKFDIDKIARLTEIYDQDFSNADPSNIRDQLE 60
           MSLLVDVKTRLVNLRNDAWQPLFEEDPFSKFDIDKIARLTEIYDQDFSNADPSNIRDQLE
Sbjct: 1   MSLLVDVKTRLVNLRNDAWQPLFEEDPFSKFDIDKIARLTEIYDQDFSNADPSNIRDQLE 60

Query: 61  TFILHVPRIDDFVGCHYFGSLAIKIVETEKNTEVILFYNDNLKNELKQNGRQQRG 115
           TFILHVPRIDDFVGCHYFGSLAIKIVETEKNTEVILFYNDNLKNELKQNGRQQRG
Sbjct: 61  TFILHVPRIDDFVGCHYFGSLAIKIVETEKNTEVILFYNDNLKNELKQNGRQQRG 115



>Os08g0361500 
          Length = 500

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 59/73 (80%)

Query: 26  DPFSKFDIDKIARLTEIYDQDFSNADPSNIRDQLETFILHVPRIDDFVGCHYFGSLAIKI 85
           + FSKFD+DKIARLTE+YDQDFS  D SNI+DQLETFILHV R+DDF  CH  GSLA+K+
Sbjct: 389 ESFSKFDVDKIARLTEMYDQDFSLLDRSNIKDQLETFILHVRRVDDFTTCHDLGSLAMKM 448

Query: 86  VETEKNTEVILFY 98
           VET+K+    L Y
Sbjct: 449 VETQKHIVFPLVY 461



>Os05g0194700 
          Length = 717

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 25  EDPFSKFDIDKIARLTEIYDQDFSNADPSNIRDQLETFILHVPRIDDFVGCHYFGSLAIK 84
           +D FS+FD+D +  L +IY  DFS  D   +R+QL  FI+HV    DF  C+   +LA+K
Sbjct: 572 DDSFSQFDVDMLLSLADIYSADFSMTDREILREQLHMFIIHVRNTADFSSCNDLATLALK 631

Query: 85  IVETEKNTEVILFY 98
           +V+TE +    L Y
Sbjct: 632 MVQTEMHVAFPLVY 645



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,575,149
Number of extensions: 127321
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)