BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0451700 Os11g0451700|012-064-G12
         (326 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0451700  Similar to Dehydrin DHN1 (M3) (RAB-17 protein)      162   3e-40

>Os11g0451700 Similar to Dehydrin DHN1 (M3) (RAB-17 protein)
          Length = 326

 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/263 (42%), Positives = 112/263 (42%)

Query: 1   MAHFQGQQHGHPAARVDEYGNPVAAGHGITGTQEXXXXXXXXXXXXXQPQHAFGGATDXX 60
           MAHFQGQQHGHPAARVDEYGNPVAAGHGITGTQE             QPQHAFGGATD  
Sbjct: 1   MAHFQGQQHGHPAARVDEYGNPVAAGHGITGTQEAGAGGYGAAGNVAQPQHAFGGATDAG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXSGQPAYGATGTGVHDAGGLMPXXXXXXXXXXXXXXXX 120
                                  SGQPAYGATGTGVHDAGGLMP                
Sbjct: 61  GYGRQAGYGATGTGTHDAAGYGGSGQPAYGATGTGVHDAGGLMPGHTAGHGTTGTGVHHG 120

Query: 121 XXXXLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHMAGHGATT 180
               LP                                            RHMAGHGATT
Sbjct: 121 AGAGLPAGQTAGYGTTGVTGAQHGAGGLGTGHTAGYGTTGAHHGAGGLGTRHMAGHGATT 180

Query: 181 TPDTMXXXXXXXXXXXXXXXXXXXXXXXXXQFQPAREEHKTGGILRRXXXXXXXXXXEDD 240
           TPDTM                         QFQPAREEHKTGGILRR          EDD
Sbjct: 181 TPDTMAYGTTGTGAPHGATAGTGAYPHAGGQFQPAREEHKTGGILRRSGSSSSSSSSEDD 240

Query: 241 GMGXXXXXXXXXXXXXXLPGGNK 263
           GMG              LPGGNK
Sbjct: 241 GMGGRRKKGIKEKIKEKLPGGNK 263



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,666,352
Number of extensions: 113897
Number of successful extensions: 111
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)