BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0442900 Os11g0442900|AK110914
         (451 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0442900  Zinc finger, C2H2-type domain containing protein    494   e-140

>Os11g0442900 Zinc finger, C2H2-type domain containing protein
          Length = 451

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/451 (59%), Positives = 270/451 (59%)

Query: 1   MEGGNSSKGAMEGGHRCRRPNVDDDDQIEEGEICYDCHVSGSETDDDEHHRRAVLPPRDN 60
           MEGGNSSKGAMEGGHRCRRPNVDDDDQIEEGEICYDCHVSGSETDDDEHHRRAVLPPRDN
Sbjct: 1   MEGGNSSKGAMEGGHRCRRPNVDDDDQIEEGEICYDCHVSGSETDDDEHHRRAVLPPRDN 60

Query: 61  GDGCAEHKRCRLDNAATAPAPSAGPVLTTSNGXXXXXXXXXXXXXXXXXXTMAREVFACR 120
           GDGCAEHKRCRLDNAATAPAPSAGPVLTTSNG                  TMAREVFACR
Sbjct: 61  GDGCAEHKRCRLDNAATAPAPSAGPVLTTSNGSAIVAIASAAAAAAAAASTMAREVFACR 120

Query: 121 ICRKEFDTRKAVDGHMRVHRQQSIATPKYNAADNSRVTVVAEPRTDLDLXXXXXXXXXXX 180
           ICRKEFDTRKAVDGHMRVHRQQSIATPKYNAADNSRVTVVAEPRTDLDL           
Sbjct: 121 ICRKEFDTRKAVDGHMRVHRQQSIATPKYNAADNSRVTVVAEPRTDLDLSGPHGSSSAPP 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSLPYMCKMQGCGRAFPTXXXXX 240
                                                KSLPYMCKMQGCGRAFPT     
Sbjct: 181 SPPAPANPPNHNQAVGHQPAAAAPNAGVVVVVEGAPQKSLPYMCKMQGCGRAFPTHQGLG 240

Query: 241 XXXXXXXNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHRCRECGMEWKTGFALGGHMRK 300
                  NR                            KHRCRECGMEWKTGFALGGHMRK
Sbjct: 241 GHAAGHQNRSKAAAAAASEQGSSGAGADGCHGGADSSKHRCRECGMEWKTGFALGGHMRK 300

Query: 301 HQTKETVTVNEKEPNVAGKHISXXXXXXXXXXXXXXEVTSSEPLDQPPLLSMVVGXXXXX 360
           HQTKETVTVNEKEPNVAGKHIS              EVTSSEPLDQPPLLSMVVG     
Sbjct: 301 HQTKETVTVNEKEPNVAGKHISLGPPPLPDLTPAAAEVTSSEPLDQPPLLSMVVGAEVAA 360

Query: 361 XXXXXXXXXXXXXXXQDDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
                          QDDQ                                         
Sbjct: 361 PALLALANEAAALPPQDDQAEEEAAAEAAAPAEAAALRPVEAGAEAADVGAAPEEPLLAP 420

Query: 421 IAGMGTVRIFGFLVEKPAPGDGSGGEGSAPA 451
           IAGMGTVRIFGFLVEKPAPGDGSGGEGSAPA
Sbjct: 421 IAGMGTVRIFGFLVEKPAPGDGSGGEGSAPA 451



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,596,081
Number of extensions: 419745
Number of successful extensions: 1679
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1678
Number of HSP's successfully gapped: 3
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)