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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0442900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0219) R2 : 0.00231
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0474 (0.0461) R2dN8 : 0.00299 R2N8 : 0.00231
σ : 0.412
deviance : 78.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.77 0.404 2.84 -0.0946 0.027 0.401 -0.434 0.9 0.165 23.2 2.3 5949 -- --
74.76 0.403 2.85 -0.0852 0.028 0.45 -0.484 -- 0.196 23.3 2.2 5826 -- --
74.55 0.402 2.84 -0.0893 0.0309 0.399 -- 0.972 0.167 22.3 2.373 5946 -- --
75.56 0.405 2.85 -0.0339 0.036 0.415 -- -- 0.184 20 2.2 5857 -- --
74.63 0.402 2.84 -0.0809 -- 0.402 -- 0.927 0.165 -- 2.3 5937 -- --
77.04 0.411 2.89 0.0635 0.0113 -- -0.446 -- 0.0546 23.4 -- -- -- --
77.81 0.413 2.89 0.0829 0.0417 -- -- -- 0.0573 18.8 -- -- -- --
75.68 0.405 2.86 -0.0412 -- 0.415 -- -- 0.18 -- 2.17 5826 -- --
75.59 0.405 2.86 -- 0.0426 0.396 -- -- 0.174 19.5 2.2 5857 -- --
77.91 0.412 2.88 0.082 -- -- -- -- 0.0565 -- -- -- -- --
78 0.413 2.89 -- 0.0407 -- -- -- 0.0481 18.9 -- -- -- --
75.72 0.405 2.86 -- -- 0.398 -- -- 0.18 -- 2.188 5826 -- --
78.08 0.412 2.89 -- -- -- -- -- 0.0474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.01 precipitation 0.1 270 > th dose independent rect. 18 1
2 69.01 precipitation 0.1 270 > th dose dependent rect. 18 1
19 71.31 atmosphere 1000.0 270 < th dose independent rect. 16 1
21 71.34 atmosphere 1000.0 270 < th dose dependent rect. 16 1
22 71.38 temperature 20.0 10 < th dose independent rect. 19 1
40 71.42 temperature 20.0 10 < th dose independent sin 20 NA
41 71.42 temperature 20.0 10 < th dose independent rect. 9 11
64 71.74 atmosphere 1010.0 90 > th dose independent rect. 8 3
81 72.05 wind 1.0 270 < th dose dependent rect. 9 1
85 72.21 temperature 20.0 10 > th dose independent sin 20 NA
93 72.37 atmosphere 1010.0 10 > th dose independent rect. 9 1
153 72.44 wind 1.0 270 < th dose independent rect. 9 1
154 72.47 atmosphere 1005.0 10 < th dose independent rect. 20 1
160 72.49 atmosphere 1010.0 90 < th dose independent rect. 3 16
161 72.50 temperature 20.0 10 > th dose independent rect. 12 8
164 72.51 temperature 20.0 10 > th dose independent rect. 12 13
172 72.60 temperature 20.0 10 > th dose independent rect. 12 21
192 72.88 temperature 25.0 270 < th dose independent rect. 8 1
194 72.93 precipitation 0.1 270 > th dose dependent sin 20 NA
204 73.02 temperature 30.0 270 < th dose dependent rect. 7 2
209 73.04 wind 9.0 10 < th dose dependent rect. 19 17
210 73.05 temperature 20.0 10 < th dose independent rect. 18 6
216 73.05 temperature 10.0 720 > th dose dependent rect. 3 6
221 73.06 atmosphere 1010.0 90 < th dose independent rect. 23 20
228 73.07 wind 1.0 1440 < th dose dependent rect. 23 1
241 73.15 wind 3.0 10 < th dose independent rect. 20 1
242 73.15 temperature 20.0 10 > th dose independent rect. 12 10
244 73.18 radiation 20.0 90 > th dose independent rect. 8 4
259 73.24 wind 1.0 90 < th dose dependent rect. 8 3
268 73.25 atmosphere 1005.0 30 > th dose dependent rect. 2 1
269 73.25 wind 1.0 1440 < th dose dependent rect. 20 4
274 73.26 temperature 20.0 30 > th dose dependent rect. 2 1
293 73.28 wind 3.0 30 < th dose dependent rect. 2 1
300 73.28 temperature 30.0 270 < th dose dependent rect. 6 15
308 73.30 wind 1.0 30 < th dose independent rect. 2 1
309 73.30 temperature 20.0 30 > th dose independent rect. 2 1
355 73.36 wind 1.0 10 > th dose independent rect. 12 21
358 73.36 temperature 30.0 270 < th dose dependent rect. 6 17
359 73.37 temperature 25.0 30 < th dose independent rect. 2 1
371 73.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
373 73.39 humidity 80.0 30 > th dose independent rect. 2 1
381 73.40 temperature 30.0 10 < th dose independent rect. 9 3
388 73.40 temperature 10.0 10 > th dose dependent rect. 12 21
395 73.41 humidity 50.0 30 > th dose dependent rect. 2 1
399 73.42 temperature 10.0 30 > th dose independent rect. 2 1
402 73.42 humidity 50.0 30 > th dose independent rect. 2 1
405 73.42 atmosphere 995.0 30 > th dose independent rect. 2 1
407 73.42 atmosphere 1010.0 30 < th dose independent rect. 2 1
409 73.42 radiation 1.0 30 < th dose independent rect. 2 1
414 73.42 precipitation 0.1 30 < th dose independent rect. 2 1
417 73.42 temperature 10.0 30 > th dose independent rect. 3 23
419 73.42 radiation 1.0 30 < th dose dependent rect. 2 1
424 73.42 precipitation 0.1 30 < th dose dependent rect. 2 1
436 73.45 wind 1.0 90 > th dose independent rect. 12 20
443 73.47 atmosphere 995.0 10 > th dose dependent rect. 9 3
452 73.49 wind 1.0 1440 < th dose independent rect. 20 4
460 73.51 temperature 30.0 90 < th dose dependent rect. 8 19
461 73.52 wind 1.0 10 < th dose independent rect. 23 1
466 73.52 wind 1.0 10 < th dose dependent rect. 23 1
473 73.54 temperature 10.0 720 > th dose dependent rect. 21 12
475 73.55 wind 1.0 270 < th dose independent rect. 6 3
478 73.55 wind 1.0 270 < th dose dependent rect. 6 18
484 73.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
489 73.59 wind 1.0 270 < th dose independent rect. 6 6
498 73.60 wind 1.0 1440 > th dose independent rect. 20 4
505 73.61 atmosphere 1010.0 10 > th dose independent sin 4 NA
507 73.61 wind 1.0 14400 > th dose independent rect. 21 3
511 73.61 atmosphere 1005.0 90 > th dose dependent rect. 9 2
525 73.63 wind 1.0 10 < th dose dependent rect. 12 13
548 73.65 humidity 80.0 30 < th dose independent rect. 9 3
560 73.65 temperature 10.0 90 > th dose dependent rect. 3 16
563 73.66 wind 1.0 14400 < th dose independent rect. 21 3
578 73.67 wind 9.0 10 < th dose dependent rect. 9 3
580 73.67 temperature 30.0 720 < th dose dependent rect. 24 10
617 73.69 humidity 90.0 10 < th dose dependent rect. 9 3
623 73.69 wind 5.0 10 < th dose dependent rect. 9 18
640 73.71 wind 1.0 14400 < th dose dependent rect. 20 4
649 73.72 temperature 30.0 30 < th dose dependent rect. 2 1
658 73.73 temperature 30.0 90 < th dose independent rect. 19 17
662 73.73 temperature 15.0 720 > th dose dependent rect. 23 10
691 73.76 wind 1.0 4320 < th dose dependent rect. 11 1
697 73.77 humidity 90.0 270 < th dose independent rect. 19 1
717 73.78 temperature 10.0 270 > th dose dependent rect. 2 14
721 73.79 atmosphere 1010.0 90 < th dose independent rect. 21 22
730 73.80 temperature 15.0 1440 > th dose independent rect. 13 7
752 73.81 wind 7.0 10 < th dose dependent rect. 19 8
762 73.82 temperature 25.0 90 < th dose dependent rect. 18 1
769 73.82 temperature 10.0 720 > th dose dependent rect. 21 17
796 73.84 wind 1.0 10 < th dose independent rect. 12 13
808 73.85 atmosphere 995.0 270 > th dose dependent rect. 7 3
816 73.86 temperature 20.0 720 > th dose independent rect. 3 5
843 73.87 temperature 30.0 30 < th dose dependent rect. 19 8