BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0425300 Os11g0425300|AK065810
         (363 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0425300  Conserved hypothetical protein                      668   0.0  
AK060855                                                          633   0.0  

>Os11g0425300 Conserved hypothetical protein
          Length = 363

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/363 (91%), Positives = 333/363 (91%)

Query: 1   MAILPLXXXXXXXXXXXXXXXXXXRPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL 60
           MAILPL                  RPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL
Sbjct: 1   MAILPLSISHSLTSALSATSSGIGRPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL 60

Query: 61  GDDPSKWDPAECDALLRGGEQVASVLQXXXXXXXXXXXXGSFESLAVELIAQGVIGKRVD 120
           GDDPSKWDPAECDALLRGGEQVASVLQ            GSFESLAVELIAQGVIGKRVD
Sbjct: 61  GDDPSKWDPAECDALLRGGEQVASVLQEMLKLMEDMEMDGSFESLAVELIAQGVIGKRVD 120

Query: 121 EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK 180
           EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK
Sbjct: 121 EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK 180

Query: 181 DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR 240
           DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR
Sbjct: 181 DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR 240

Query: 241 LVIVREEARNMMGGGLLDERNDRGFTTLPEAEVNFLSKLVALKPGKALERMIKDVMQGKA 300
           LVIVREEARNMMGGGLLDERNDRGFTTLPEAEVNFLSKLVALKPGKALERMIKDVMQGKA
Sbjct: 241 LVIVREEARNMMGGGLLDERNDRGFTTLPEAEVNFLSKLVALKPGKALERMIKDVMQGKA 300

Query: 301 EGADNIENANAGPDSKLNHLTGISGRGSVTGLKPRPVRPGMFLETVSKVVYMQTTHLALQ 360
           EGADNIENANAGPDSKLNHLTGISGRGSVTGLKPRPVRPGMFLETVSKVVYMQTTHLALQ
Sbjct: 301 EGADNIENANAGPDSKLNHLTGISGRGSVTGLKPRPVRPGMFLETVSKVVYMQTTHLALQ 360

Query: 361 HNI 363
           HNI
Sbjct: 361 HNI 363



>AK060855 
          Length = 453

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/365 (87%), Positives = 324/365 (88%), Gaps = 4/365 (1%)

Query: 1   MAILPLXXXXXXXXXXXXXXXXXXRPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL 60
           MAILPL                  RPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL
Sbjct: 72  MAILPLSISHSLTSALSATSSGIGRPVARLLHPRVPSRPTVICLAAPPKVPVPIASPASL 131

Query: 61  GDDPSKWDPAECDALLRGGEQVASVLQXXXXXXXXXXXXGSFESLAVELIAQGVIGKRVD 120
           GDDPSKWDPAECDALLRGGEQVASVLQ            GSFESLAVELIAQGVIGKRVD
Sbjct: 132 GDDPSKWDPAECDALLRGGEQVASVLQEMLKLMEDMEMDGSFESLAVELIAQGVIGKRVD 191

Query: 121 EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK 180
           EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK
Sbjct: 192 EMESGFLMALDYMIQLAEKDSDNERKSLLEVVKQTVLDHLTKKCPPHVQVVGLLCQTEKK 251

Query: 181 DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR 240
           DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR
Sbjct: 252 DSRHELLRRVAAGGGVFKNDKGLKCQIPGANLNDIANQADDLLESMESRPTIPDRKLLAR 311

Query: 241 LVIVREEARNMMGGGLLDERNDRGFTTLPEAEVNFLSKLVALKPGKALERMIKDVMQGKA 300
           LVIVREEARNMMGGGLLDERNDRGFTTLP AEVNFLSKLVALKPGKALERMIKDVMQGKA
Sbjct: 312 LVIVREEARNMMGGGLLDERNDRGFTTLPGAEVNFLSKLVALKPGKALERMIKDVMQGKA 371

Query: 301 EGADNIENANAGPDSKLNHLTGISGRGSVTGLKPRPVRPGMFLETVSKV---VYM-QTTH 356
           EGADNIENANAGPDSK NHLTGISGRGSVTGLKPRPVRPGMFLETVSKV   +Y   T+ 
Sbjct: 372 EGADNIENANAGPDSKPNHLTGISGRGSVTGLKPRPVRPGMFLETVSKVLGGIYANNTSG 431

Query: 357 LALQH 361
           +  QH
Sbjct: 432 ITAQH 436



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,022,630
Number of extensions: 513628
Number of successful extensions: 1805
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)