Os11g0425300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0425300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.88 | 0.318 | 12.7 | -0.598 | 0.611 | 1.31 | -0.651 | -1.82 | -0.607 | 0.00549 | 23.42 | 126 | -- | -- |
| 47.35 | 0.32 | 12.6 | -0.328 | 0.577 | 1.15 | -0.473 | -- | -0.53 | 23.9 | 23 | 156 | -- | -- |
| 47.5 | 0.321 | 12.7 | -0.506 | 0.593 | 1.26 | -- | -1.33 | -0.588 | 0.0724 | 23.33 | 139 | -- | -- |
| 48.25 | 0.324 | 12.6 | -0.305 | 0.59 | 1.17 | -- | -- | -0.531 | 24 | 23.12 | 139 | -- | -- |
| 53.29 | 0.34 | 12.7 | -0.713 | -- | 1.23 | -- | -1.73 | -0.661 | -- | 21.2 | 648 | -- | -- |
| 70.16 | 0.393 | 12.6 | -0.0925 | 0.543 | -- | -0.539 | -- | -0.366 | 20.7 | -- | -- | -- | -- |
| 71.09 | 0.395 | 12.6 | -0.074 | 0.547 | -- | -- | -- | -0.365 | 20.6 | -- | -- | -- | -- |
| 55.29 | 0.346 | 12.6 | -0.35 | -- | 1.11 | -- | -- | -0.562 | -- | 21 | 641 | -- | -- |
| 50.51 | 0.331 | 12.6 | -- | 0.577 | 1.09 | -- | -- | -0.481 | 23.7 | 23.41 | 132 | -- | -- |
| 87.88 | 0.438 | 12.6 | -0.0761 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 71.24 | 0.395 | 12.6 | -- | 0.547 | -- | -- | -- | -0.357 | 20.5 | -- | -- | -- | -- |
| 58.27 | 0.356 | 12.6 | -- | -- | 1.02 | -- | -- | -0.506 | -- | 21.39 | 608 | -- | -- |
| 88.03 | 0.438 | 12.6 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 6 | 46.10 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 8 | 46.12 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 21 | 46.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 26 | 46.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 28 | 46.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 52 | 47.09 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 53 | 47.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 58 | 47.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 84 | 47.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 113 | 47.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 151 | 47.58 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 301 | 48.12 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 320 | 48.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 494 | 48.52 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 725 | 49.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 887 | 49.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 965 | 49.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 996 | 49.76 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |