BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0421800 Os11g0421800|AK106317
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0421800  Conserved hypothetical protein                      282   1e-76
Os12g0416800  Hypothetical protein                                 76   1e-14

>Os11g0421800 Conserved hypothetical protein
          Length = 175

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 144/175 (82%)

Query: 1   MKERVRRRRIPAFGEWNXXXXXXXXXXXXXXXXXXXXXXWPVTQYFDSAMQARGLVISLX 60
           MKERVRRRRIPAFGEWN                      WPVTQYFDSAMQARGLVISL 
Sbjct: 1   MKERVRRRRIPAFGEWNYDGDGDLGGGGGCYGYGYRDGDWPVTQYFDSAMQARGLVISLP 60

Query: 61  XXXXXXXXAVKWIDSGALGEEEVVDEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSRVAD 120
                   AVKWIDSGALGEEEVVDEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSRVAD
Sbjct: 61  PSPKPPKKAVKWIDSGALGEEEVVDEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSRVAD 120

Query: 121 GGAHAAMGYKGCRPAVVKAVDRDLYEIPPDMLCNKPRKRVTRSLWMGCLGLSCVA 175
           GGAHAAMGYKGCRPAVVKAVDRDLYEIPPDMLCNKPRKRVTRSLWMGCLGLSCVA
Sbjct: 121 GGAHAAMGYKGCRPAVVKAVDRDLYEIPPDMLCNKPRKRVTRSLWMGCLGLSCVA 175



>Os12g0416800 Hypothetical protein
          Length = 144

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 32/174 (18%)

Query: 3   ERVRRRRIPAFGEWNXXXXXXXXXXXXXXXXXXXXXXWPVTQYFDSAMQARGLVISLXXX 62
           E+ RRR IPAFGEWN                       P+TQYFDSAM+ +GLV++    
Sbjct: 2   EKGRRRHIPAFGEWNQQCEE-----------------LPITQYFDSAME-QGLVVTAGHY 43

Query: 63  XXXXXXAVKWIDSGALGEEEVVDEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSRVADGG 122
                  + +  +G+   ++   + +  +           G E+ AAR++   S V DGG
Sbjct: 44  YHATAGELLFKVAGSPPPQKPPKKVRSTKN----------GMENQAARRRDGPSVVVDGG 93

Query: 123 AHAAMGYKGCRPAVVKAVDRDLYEIPPDMLCNKPR-KRVTRSLWMGCLGLSCVA 175
                     RP VV+AVD DLY++P ++L  K + ++  RSLWMGC+GL+CVA
Sbjct: 94  VVVHGSR---RPRVVRAVDEDLYKVPSELLRKKAKGRKHVRSLWMGCVGLNCVA 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,641,511
Number of extensions: 211985
Number of successful extensions: 788
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)