Os11g0421800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0421800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.98	(0.04)	R²	:	0.414
β₁	:	1.66	(0.146)	R²_dD	:	0.172	R²_D	:	0.125
β₂	:	0.668	(0.104)	R²_dC	:	0.0532	R²_C	:	0.0428
β₃	:	-0.981	(0.0781)	R²_dE	:	0.204	R²_E	:	0.168
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.421	(0.0855)	R²_dN8	:	0.042	R²_N8	:	-0.00342
σ	:	0.747
deviance	:	257.41
__

_____

C
peak time of C	:	6.43
E
wheather	:	radiation
threshold	:	11.28
memory length	:	33
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
249.93	0.743	4.97	1.63	0.665	-0.953	1.51	0.531	0.429	6.17	11.34	34	--	--
251.25	0.738	4.98	1.65	0.679	-0.98	1.75	--	0.413	6.44	11.34	33	--	--
255.47	0.744	4.97	1.66	0.673	-0.989	--	0.577	0.428	6.41	11.34	33	--	--
257.41	0.747	4.98	1.66	0.668	-0.981	--	--	0.421	6.43	11.28	33	--	--
277.46	0.776	4.99	1.69	--	-0.985	--	0.654	0.435	--	10.32	48	--	--
285.6	0.792	5.01	1.58	1.18	--	0.483	--	0.342	2.79	--	--	--	--
286.36	0.792	5.01	1.57	1.18	--	--	--	0.34	2.7	--	--	--	--
275.51	0.773	4.99	1.79	--	-1.04	--	--	0.472	--	11.16	198	--	--
317.5	0.83	5.04	--	0.787	-1.02	--	--	0.198	6.75	9.37	23	--	--
367.63	0.896	5.01	1.62	--	--	--	--	0.37	--	--	--	--	--
350.93	0.876	5.05	--	1.21	--	--	--	0.165	2.72	--	--	--	--
340.51	0.859	5.06	--	--	-0.999	--	--	0.233	--	9.318	201	--	--
436.47	0.975	5.05	--	--	--	--	--	0.19	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	243.75	radiation	10	30	> th	dose independent	rect.	9	23
3	248.03	radiation	10	30	> th	dose independent	rect.	7	10
17	248.54	radiation	10	30	> th	dose independent	sin	22	NA
19	249.18	radiation	30	10	< th	dose dependent	rect.	5	16
21	249.58	radiation	30	10	< th	dose dependent	rect.	4	23
26	249.96	radiation	30	10	< th	dose dependent	rect.	17	23
27	250.02	radiation	10	30	< th	dose independent	rect.	5	15
29	250.11	radiation	10	30	> th	dose independent	rect.	9	8
30	250.25	radiation	20	90	< th	dose independent	rect.	13	22
60	250.80	radiation	30	90	< th	dose dependent	rect.	23	23
61	250.86	radiation	10	30	> th	dose independent	no	NA	NA
142	251.07	radiation	20	10	< th	dose independent	rect.	17	23
143	251.07	radiation	30	90	< th	dose dependent	rect.	13	22
150	251.39	radiation	20	90	< th	dose independent	rect.	13	20
151	251.41	radiation	20	10	< th	dose independent	rect.	4	23
155	251.56	radiation	30	30	< th	dose dependent	no	NA	NA
156	251.56	radiation	30	30	< th	dose dependent	rect.	15	23
162	251.88	radiation	30	30	< th	dose dependent	sin	21	NA
188	252.25	radiation	10	30	< th	dose independent	sin	22	NA
196	252.34	radiation	30	30	< th	dose dependent	rect.	8	23
201	252.49	radiation	20	10	< th	dose independent	rect.	13	21
364	253.25	radiation	1	30	> th	dose dependent	rect.	7	10
368	253.35	radiation	20	10	< th	dose independent	rect.	8	23
372	253.43	radiation	20	90	< th	dose independent	rect.	15	18
373	253.43	radiation	20	90	> th	dose independent	rect.	11	23
377	253.52	radiation	20	90	< th	dose independent	rect.	13	18
395	253.85	radiation	30	10	< th	dose dependent	rect.	2	23
398	253.93	radiation	20	90	< th	dose independent	rect.	15	20
403	254.02	radiation	30	30	< th	dose dependent	rect.	19	23
454	254.30	radiation	20	10	< th	dose independent	rect.	2	23
480	254.47	radiation	40	90	< th	dose dependent	rect.	13	18
492	254.61	radiation	20	10	< th	dose independent	rect.	17	17
524	254.92	temperature	25	720	< th	dose independent	rect.	21	2
525	254.93	radiation	20	90	< th	dose independent	rect.	15	16
529	254.99	humidity	90	30	< th	dose independent	rect.	7	10
536	255.06	radiation	20	10	< th	dose independent	no	NA	NA
537	255.06	radiation	20	10	< th	dose independent	rect.	23	23
538	255.06	radiation	20	90	< th	dose independent	rect.	23	23
545	255.12	temperature	25	720	< th	dose independent	rect.	21	5
549	255.15	radiation	30	90	< th	dose dependent	rect.	15	18
551	255.20	radiation	20	10	< th	dose independent	rect.	15	23
589	255.45	radiation	10	30	< th	dose independent	rect.	5	13
596	255.50	radiation	1	30	> th	dose dependent	rect.	9	23
615	255.68	radiation	1	90	> th	dose dependent	rect.	11	23
647	255.95	radiation	20	90	< th	dose independent	rect.	13	8
652	255.97	humidity	80	10	< th	dose independent	rect.	9	8
656	256.01	radiation	40	90	< th	dose dependent	rect.	13	8
766	256.31	radiation	10	30	< th	dose independent	rect.	19	23
782	256.46	humidity	80	10	< th	dose independent	rect.	23	18
794	256.54	radiation	40	90	< th	dose dependent	rect.	15	16
795	256.54	radiation	10	10	> th	dose dependent	rect.	12	23
980	256.82	wind	9	30	< th	dose independent	rect.	7	10
992	256.89	temperature	20	30	> th	dose independent	rect.	7	10