BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0297000 Os11g0297000|AK061209
         (178 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0297000  Conserved hypothetical protein                      162   2e-40
Os07g0627600                                                       79   1e-15

>Os11g0297000 Conserved hypothetical protein
          Length = 178

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 95/161 (59%)

Query: 18  LTRIRRRQALSCSDPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAISSSPPTTXX 77
           LTRIRRRQALSCSDPATA                             AIAISSSPPTT  
Sbjct: 18  LTRIRRRQALSCSDPATAGLVPPGSGSGLGGRVGGDLVDLGGRVGGGAIAISSSPPTTRR 77

Query: 78  XXXXXXXXXXXXXXXXXXXXGGYRRLGSSASVSTTTDVIWVEVGTTKGDRSLFHVDSAVL 137
                               GGYRRLGSSASVSTTTDVIWVEVGTTKGDRSLFHVDSAVL
Sbjct: 78  WPDAAPSSPPRRPIHPPTPRGGYRRLGSSASVSTTTDVIWVEVGTTKGDRSLFHVDSAVL 137

Query: 138 ETGSVRRFLXXXXXXXXXXXXXXXMDALLFEHLLWLQAVGT 178
           ETGSVRRFL               MDALLFEHLLWLQAVGT
Sbjct: 138 ETGSVRRFLAVAGQRARGGAVAVAMDALLFEHLLWLQAVGT 178



>Os07g0627600 
          Length = 163

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 44/70 (62%)

Query: 108 SVSTTTDVIWVEVGTTKGDRSLFHVDSAVLETGSVRRFLXXXXXXXXXXXXXXXMDALLF 167
           S S   DVI VEVGTTKG+RS+FHVD AVLE G VRR L               +D LLF
Sbjct: 56  SSSAAGDVIRVEVGTTKGERSVFHVDQAVLEAGPVRRLLAAAGRRTRGGAVAVAVDVLLF 115

Query: 168 EHLLWLQAVG 177
           EHLLWLQA G
Sbjct: 116 EHLLWLQAAG 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,132,801
Number of extensions: 60928
Number of successful extensions: 119
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)